SBVB specifications

Unique identifier:
OMICS_20607
Software type:
Application/Script
Restrictions to use:
None
Input format:
VCF
Output format:
GRM, Plink
Programming languages:
Fortran
Stability:
Stable
Name:
Sequence-Based Virtual Breeding
Interface:
Command line interface
Input data:
A pedigree file, a file with causal SNP positions, controls epistasis (optional), a file with a list of SNP positions in an array and controls local recombination rates (optional).
Output data:
Phenotypes and genetic values per individual, QTN frequencies and ascribed variances and marker genotypes.
Operating system:
Unix/Linux
Computer skills:
Advanced
Maintained:
Yes

versioning

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SBVB distribution

download

SBVB support

Documentation

Maintainer

  • Miguel Perez-Enciso <>

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Publications

Institution(s)

Centre for Research in Agricultural Genomics (CRAG), CSIC-IRTA-UAB-UB Consortium, Barcelona, Spain; Departament de Ciència Animal i dels Aliments, Universitat Autònoma de Barcelona, Barcelona, Spain; ICREA, Barcelona, Spain; Michigan State University, Dept. of Epidemiology & Biostatistics, and Department of Statistics, East Lansing, MI, USA; INRA, UMR 1388 GENPHYSE, Castanet-Tolosan, France

Funding source(s)

Supported by projects AGL2013-41834-R and AGL2016-78709-R (Ministerio de Economía y Competitividad, Spain) to MPE, INRA metaprogram SelGen (France) and NIH grant R01GM101219 (USA).

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