Sequence logos have become a popular way to graphically represent DNA and amino acid sequence patterns from a set of aligned sequences. Each position of the alignment is represented by a column of stacked symbols with its total height reflecting the information content in this position.
Source text:
(Workman et al., 2005) enoLOGOS: a versatile web tool for energy normalized sequence logos. Nucleic Acids Res.
Builds on probability theory to visualize significant conserved sequence…
Builds on probability theory to visualize significant conserved sequence patterns in multiple peptide sequence alignments against background (reference) sequence sets that can be tailored to the…
A motif visualization in which residue heights are scaled relative to their…
A motif visualization in which residue heights are scaled relative to their statistical significance. It supports real-time conditional probability calculations and visualizations.
Generates publication-quality sequence logos. ggseqlogo employs a method based…
Generates publication-quality sequence logos. ggseqlogo employs a method based on the use of polygons to draw elongated letters in ggplot2. It provides numerous features that allow tweaking of the…
Integrates detection and visualization of position-specific ultra-short motifs…
Integrates detection and visualization of position-specific ultra-short motifs within macromolecules. kpLogo overcomes the limitations of conventional motif-visualization tools in handling positional…
A tool for creating logos representing both sequence alignments and profile…
A tool for creating logos representing both sequence alignments and profile hidden Markov models.
Generates DNA sequence logos. DNAlogo can read matrices designating the bit…
Generates DNA sequence logos. DNAlogo can read matrices designating the bit values of each character directly. It can create both bit logos and frequency logos. Frequency logos contain only the…
Helps visualize the conservation and entropy of orthologous DNA and protein…
Helps visualize the conservation and entropy of orthologous DNA and protein sequences by presenting them as one long sequence logo that can be zoomed in and out of, from an overview of the entire…
Enables to observe the intra-motif dependencies and to visualize the…
Enables to observe the intra-motif dependencies and to visualize the position-specific nucleotide diversity or consensus. CircularLogo allows users to create sequence logo for revealing pairwise…
Infers the genetic code directly from a newly sequenced, unannotated genome.
Infers the genetic code directly from a newly sequenced, unannotated genome.
A Web based application designed to make the generation of sequence logos from…
A Web based application designed to make the generation of sequence logos from biological sequence alignments simple.
A web based application designed to make the generation of sequence logos easy…
A web based application designed to make the generation of sequence logos easy and painless.
A web-based tool that generates sequence logos from various input sources.
A web-based tool that generates sequence logos from various input sources.
A web-based sequence logo generator. Sequence logos are a graphical…
A web-based sequence logo generator. Sequence logos are a graphical representation of the information content stored in a multiple sequence alignment (MSA) and provide a compact and highly intuitive…
Permits to represent multiple motifs with different similarity scores.…
Permits to represent multiple motifs with different similarity scores. motifStack is able to draw amino acid sequence as easy as to draw DNA/RNA sequence. It allows users to select the font type and…
Provides an intuitive visualization of motif differences. DiffLogo is an…
Provides an intuitive visualization of motif differences. DiffLogo is an easy-to-use tool for a fast and efficient comparison of motifs. It may be applied by users with only basic knowledge in R and…
Sequence logos for DNA sequence alignments. seqLogo takes the position weight…
Sequence logos for DNA sequence alignments. seqLogo takes the position weight matrix of a DNA sequence motif and plots the corresponding sequence logo.
A Web-based tool that detects and displays statistically significant…
A Web-based tool that detects and displays statistically significant differences in position-specific symbol compositions between two sets of multiple sequence alignments. The source code is…
By using OMICtools you acknowledge that you have read and accepted the terms of the end user license agreement.
