Sequence logos have become a popular way to graphically represent DNA and amino acid sequence patterns from a set of aligned sequences. Each position of the alignment is represented by a column of stacked symbols with its total height reflecting the information content in this…
FACIL genetic…
Desktop
Web

FACIL genetic code prediction tool

Infers the genetic code directly from a newly sequenced, unannotated genome.

Infers the genetic code directly from a newly sequenced, unannotated genome.

WebDiffLogo
Web
Desktop

WebDiffLogo

Provides an intuitive visualization of motif differences. DiffLogo is an…

Provides an intuitive visualization of motif differences. DiffLogo is an easy-to-use tool for a fast and efficient comparison of motifs. It may be applied by users with only basic knowledge in R and…

kpLogo
Web
Desktop

kpLogo k-mer probability logo

Integrates detection and visualization of position-specific ultra-short motifs…

Integrates detection and visualization of position-specific ultra-short motifs within macromolecules. kpLogo overcomes the limitations of conventional motif-visualization tools in handling positional…

DNAlogo
Desktop

DNAlogo

Generates DNA sequence logos. DNAlogo can read matrices designating the bit…

Generates DNA sequence logos. DNAlogo can read matrices designating the bit values of each character directly. It can create both bit logos and frequency logos. Frequency logos contain only the…

Gene Slider
Web
Desktop

Gene Slider

Helps visualize the conservation and entropy of orthologous DNA and protein…

Helps visualize the conservation and entropy of orthologous DNA and protein sequences by presenting them as one long sequence logo that can be zoomed in and out of, from an overview of the entire…

enoLOGOS
Web

enoLOGOS

A web-based tool that generates sequence logos from various input sources.

A web-based tool that generates sequence logos from various input sources.

LogOddsLogo
Web

LogOddsLogo

A Web based application designed to make the generation of sequence logos from…

A Web based application designed to make the generation of sequence logos from biological sequence alignments simple.

pLogo
Web

pLogo

A motif visualization in which residue heights are scaled relative to their…

A motif visualization in which residue heights are scaled relative to their statistical significance. It supports real-time conditional probability calculations and visualizations.

Seq2Logo
Web

Seq2Logo

A web-based sequence logo generator. Sequence logos are a graphical…

A web-based sequence logo generator. Sequence logos are a graphical representation of the information content stored in a multiple sequence alignment (MSA) and provide a compact and highly intuitive…

Two Sample Logo
Web

Two Sample Logo

A Web-based tool that detects and displays statistically significant…

A Web-based tool that detects and displays statistically significant differences in position-specific symbol compositions between two sets of multiple sequence alignments. The source code is…

iceLogo
Desktop
Web

iceLogo

Builds on probability theory to visualize significant conserved sequence…

Builds on probability theory to visualize significant conserved sequence patterns in multiple peptide sequence alignments against background (reference) sequence sets that can be tailored to the…

WebLogo
Desktop
Web

WebLogo

A web based application designed to make the generation of sequence logos easy…

A web based application designed to make the generation of sequence logos easy and painless.

Skylign
Web

Skylign

A tool for creating logos representing both sequence alignments and profile…

A tool for creating logos representing both sequence alignments and profile hidden Markov models.

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