Sequence logos have become a popular way to graphically represent DNA and amino acid sequence patterns from a set of aligned sequences. Each position of the alignment is represented by a column of stacked symbols with its total height reflecting the information content in this…
Desktop app
Web app
FACIL genetic code… FACIL genetic code prediction tool

FACIL genetic code prediction tool

Infers the genetic code directly from a newly sequenced, unannotated genome.

Infers the genetic code directly from a newly sequenced, unannotated genome.

Desktop app
DNAlogo DNAlogo

DNAlogo

Generates DNA sequence logos. DNAlogo can read matrices designating the bit…

Generates DNA sequence logos. DNAlogo can read matrices designating the bit values of each character directly. It can create both bit logos and frequency logos. Frequency logos contain only the…

Web app
Desktop app
Gene Slider Gene Slider

Gene Slider

Helps visualize the conservation and entropy of orthologous DNA and protein…

Helps visualize the conservation and entropy of orthologous DNA and protein sequences by presenting them as one long sequence logo that can be zoomed in and out of, from an overview of the entire…

Web app
enoLOGOS enoLOGOS

enoLOGOS

A web-based tool that generates sequence logos from various input sources.

A web-based tool that generates sequence logos from various input sources.

Web app
LogOddsLogo LogOddsLogo

LogOddsLogo

A Web based application designed to make the generation of sequence logos from…

A Web based application designed to make the generation of sequence logos from biological sequence alignments simple.

Web app
pLogo pLogo

pLogo

A motif visualization in which residue heights are scaled relative to their…

A motif visualization in which residue heights are scaled relative to their statistical significance. It supports real-time conditional probability calculations and visualizations.

Web app
Seq2Logo Seq2Logo

Seq2Logo

A web-based sequence logo generator. Sequence logos are a graphical…

A web-based sequence logo generator. Sequence logos are a graphical representation of the information content stored in a multiple sequence alignment (MSA) and provide a compact and highly intuitive…

Web app
Two Sample Logo Two Sample Logo

Two Sample Logo

A Web-based tool that detects and displays statistically significant…

A Web-based tool that detects and displays statistically significant differences in position-specific symbol compositions between two sets of multiple sequence alignments. The source code is…

Desktop app
Web app
iceLogo iceLogo

iceLogo

Builds on probability theory to visualize significant conserved sequence…

Builds on probability theory to visualize significant conserved sequence patterns in multiple peptide sequence alignments against background (reference) sequence sets that can be tailored to the…

Desktop app
Web app
WebLogo WebLogo

WebLogo

A web based application designed to make the generation of sequence logos easy…

A web based application designed to make the generation of sequence logos easy and painless.

Web app
Skylign Skylign

Skylign

A tool for creating logos representing both sequence alignments and profile…

A tool for creating logos representing both sequence alignments and profile hidden Markov models.

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