A web based application designed to make the generation of sequence logos easy and painless.
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Sequence logos for DNA sequence alignments. seqLogo takes the position weight matrix of a DNA sequence motif and plots the corresponding sequence logo.
Builds on probability theory to visualize significant conserved sequence patterns in multiple peptide sequence alignments against background (reference) sequence sets that can be tailored to the studied system and the used protocol. The unique advantages of iceLogo compared to other sequence logo creating tools is that iceLogo has a more dynamic nature and is more correct and complete in the analysis of conserved sequence patterns.
A Web-based tool that detects and displays statistically significant differences in position-specific symbol compositions between two sets of multiple sequence alignments. The source code is distributed under the MIT Open Source license agreement and is available for download free of charge.
A motif visualization in which residue heights are scaled relative to their statistical significance. It supports real-time conditional probability calculations and visualizations.
Obsolete
A web-based tool that generates sequence logos from various input sources.
A web-based sequence logo generator. Sequence logos are a graphical representation of the information content stored in a multiple sequence alignment (MSA) and provide a compact and highly intuitive representation of the position-specific amino acid composition of binding motifs, active sites, etc. in biological sequences.