A web based application designed to make the generation of sequence logos easy and painless.
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Sequence logos for DNA sequence alignments. seqLogo takes the position weight matrix of a DNA sequence motif and plots the corresponding sequence logo.
Builds on probability theory to visualize significant conserved sequence patterns in multiple peptide sequence alignments against background (reference) sequence sets that can be tailored to the studied system and the used protocol. The unique advantages of iceLogo compared to other sequence logo creating tools is that iceLogo has a more dynamic nature and is more correct and complete in the analysis of conserved sequence patterns.
A web-based sequence logo generator. Sequence logos are a graphical representation of the information content stored in a multiple sequence alignment (MSA) and provide a compact and highly intuitive representation of the position-specific amino acid composition of binding motifs, active sites, etc. in biological sequences.
A tool for creating logos representing both sequence alignments and profile hidden Markov models.
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Interferon Regulatory Factor 8 Regulates Pathways for Antigen Presentation in Myeloid Cells and during Tuberculosis
Tools (3):
WebLogo, MatInspector, DAVID
Topics (2):
De novo sequencing analysis, Genome annotation
Comparative analyses imply that the enigmatic sigma factor 54 is a central controller of the bacterial exterior
Tools (3):
LOFT, Dendroscope, WebLogo
Topics (1):
De novo sequencing analysis
Conserved presence of G quadruplex forming sequences in the Long Terminal Repeat Promoter of Lentiviruses
Tools (5):
USEARCH, WebLogo, PhysBinder, Clustal W, MEGA
Topics (4):
De novo sequencing analysis, Homo sapiens, Human immunodeficiency virus 1, Bos taurus
Expression and evolutionary divergence of the non conventional olfactory receptor in four species of fig wasp associated with one species of fig
Tools (4):
Clustal W, WebLogo, EMBOSS, MEGA
Topics (2):
WGS analysis, De novo sequencing analysis
Natural HCV variants with increased replicative fitness due to NS3 helicase mutations in the C terminal helix α18
Tools (3):
MUSCLE, SeaView, WebLogo
Topics (8):
De novo sequencing analysis, Genome annotation, Hepacivirus C, Classical swine fever virus, Hepatitis, Flaviviridae Infections, Hepatitis C, Amino Acids