SePIA specifications


Unique identifier OMICS_12000
Name SePIA
Alternative name Sequence Processing Integration and Analysis
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Input data The mandatory input files for SePIA’s first module are tab-delimited text files containing the following information: unique, per-sample IDs and the corresponding path to unprocessed .fq/.fastq file. Two optional columns can be added to provide further identification of ‘treatment’ and ‘sample’ information, which are required for differential analysis and visualization.
Operating system Unix/Linux
License GNU General Public License version 3.0
Computer skills Advanced
Stability Stable
Requirements Anduril, Docker
Source code URL
Maintained Yes


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  • person_outline Sampsa Hautaniemi <>

SePIA article

SePIA institution(s)
Research Programs Unit, Genome-Scale Biology, Medicum and Department of Biochemistry and Developmental Biology, Faculty of Medicine, University of Helsinki, Helsinki, Finland
SePIA funding source(s)
Supported by the Academy of Finland (Center of Excellence in Cancer Genetics Research), the Sigrid Jusélius Foundation, Finnish Cancer Associations, and Doctoral Programme in Biomedicine.

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