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Protein sequence redundancy reduction software tools

Non-redundant protein datasets are of utmost importance in bioinformatics. Constructing such datasets means removing protein sequences that overreach certain similarity thresholds.Source text:(Sikic and Carugo 2010) Protein sequence redundancy…
skipredundant
Web

skipredundant

A tool used to remove redundant sequences from an input set. Redundancy is…

A tool used to remove redundant sequences from an input set. Redundancy is calculated for each pair of sequences in turn.

Decrease…
Web

Decrease redundancy

Allows you to reduce the redundancy in a set of aligned or unaligned sequences.

Allows you to reduce the redundancy in a set of aligned or unaligned sequences.

PISCES
Web

PISCES

A public server for culling sets of protein sequences from the Protein Data…

A public server for culling sets of protein sequences from the Protein Data Bank (PDB) by sequence identity and structural quality criteria.

CD-HIT
Desktop
Web

CD-HIT

A widely used program for clustering biological sequences to reduce sequence…

A widely used program for clustering biological sequences to reduce sequence redundancy and improve the performance of other sequence analyses. In response to the rapid increase in the amount of…

BLASTclust
Web

BLASTclust

Provides a cluster method. BLASTclust is a method that offers a set of…

Provides a cluster method. BLASTclust is a method that offers a set of unaligned FASTA sequences by single-linkage clustering. It accepts a number of parameters that can be used to controls the…

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