SSAHA specifications


Unique identifier OMICS_00690
Alternative name Sequence Search and Alignment by Hashing Algorithm
Software type Package/Module
Interface Command line interface
Restrictions to use None
Biological technology Illumina, Roche
Operating system Unix/Linux
Computer skills Advanced
Version 2.0
Stability Stable
Maintained Yes


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  • person_outline Zemin Ning <>

SSAHA article

SSAHA citation

PMCID: 4522663

[…] over 244,543 regions. both bed files are available on request., roche nimblegen wes enrichment assay. our design was processed by the roche nimblegen custom design group (madison, usa). using an ssaha algorithm, capturing baits were developed based on our design and the reference genome of the dog (canis familiaris 3.1). design settings for the baits allowed five or fewer single-base […]

SSAHA institution(s)
Informatics Division, The Sanger Centre, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK

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