SeqS specifications

Information


Unique identifier OMICS_15406
Name SeqS
Alternative name Sequence Searcher
Software type Application/Script
Interface Graphical user interface
Restrictions to use None
Input data Sequences
Input format FASTA
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
Computer skills Medium
Stability Stable
Requirements JRE
Maintained Yes

Versioning


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Documentation


Maintainer


  • person_outline CodonStatistics Team <>

Additional information


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SeqS citations

 (2)
2018
PMCID: 5770469

[…] and arg-annot44. each gene was searched against the curated gene database using the top hit from a blastn search (ncbi blast v2.2.27+) with word_size 8, num_threads 20, outfmt 7, max_target_seqs. 1, and all other options set to default. a table was generated recording individual genes that matched to an annotated resistance gene for each organism with at least 90% identity […]

2016
PMCID: 5167521

[…] libraries and the default parameters (version 4.0.5, http://www.repeatmasker.org). a blastn search was then conducted against the col-0 genome using the following parameters: ‘-max-target-seqs 1’, ‘-evalue 1e-6’ (camacho et al., 2009). coordinates of the top blast hit for each read location were then compared with the te variant sites identified using those reads. to estimate false […]

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