High-throughput sequencing data analysis bioinformatics software tools

High-throughput sequencing applications

Recent advances in the field of genomics have largely been due to the ability to sequence DNA at increasing throughput and decreasing cost. DNA sequencing was first introduced in 1977, and next-generation sequencing technologies have been available only during the past decade,…

High-throughput sequencing data analysis bioinformatics software tools

Most Recent Tools

Desktop app
G T A T C G C T A Fasta File Splitter Fasta File Splitter

Fasta File Splitter

Reads a protein FASTA file and splits it apart into a number of sections. Fasta…

Reads a protein FASTA file and splits it apart into a number of sections. Fasta File Splitter is a console application to break apart a large protein FASTA file into a series of smaller FASTA files,…

G T A T C G C T A UniVec UniVec

UniVec

Identifies segments within nucleic acid sequences which may be of vector…

Identifies segments within nucleic acid sequences which may be of vector origin. UniVec is an efficient database because a large number of redundant subsequences have been eliminated to create a…

Desktop app
G T A T C G C T A Heterogeneous BLAST Heterogeneous BLAST

H-BLAST Heterogeneous BLAST

Provides a fast parallel search tool for a heterogeneous computer that couples…

Provides a fast parallel search tool for a heterogeneous computer that couples CPUs (Central Processing Units) and GPUs (Graphics Processing Units), to accelerate BLASTX and BLASTP - basic modules of…

Desktop app
G T A T C G C T A svaseq svaseq

svaseq

Uses surrogate variable analysis (sva) for estimating unwanted noise and…

Uses surrogate variable analysis (sva) for estimating unwanted noise and unmodeled artifacts by (i) identifying the part of the genomic data only affected by artifacts and (ii) estimating the…

Most Popular Tools

Desktop app
G T A T C G C T A SAMtools SAMtools

SAMtools

A suite of programs for interacting with high-throughput sequencing data. It…

A suite of programs for interacting with high-throughput sequencing data. It can manipulate alignments in the SAM/BAM/CRAM formats : reading, writing, editing, indexing, viewing and converting…

Desktop app
G T A T C G C T A Bowtie Bowtie

Bowtie

An ultrafast, memory-efficient short read aligner. It aligns short DNA…

An ultrafast, memory-efficient short read aligner. It aligns short DNA sequences (reads) to the human genome at a rate of over 25 million 35-bp reads per hour. Bowtie indexes the genome with a…

Web app
G T A T C G C T A SNPdryad SNPdryad

SNPdryad

A computational method that can predict deleterious effect of amino acid…

A computational method that can predict deleterious effect of amino acid substitutions occurred in human proteins. SNPdryad outperforms other leading algorithms in accurately predicting deleterious…

Desktop app
G T A T C G C T A Hypergeometric… Hypergeometric Optimization of Motif EnRichment

HOMER Hypergeometric Optimization of Motif EnRichment

A suite of tools for Motif Discovery and next-gen sequencing analysis. HOMER…

A suite of tools for Motif Discovery and next-gen sequencing analysis. HOMER contains many useful tools for analyzing ChIP-Seq, GRO-Seq, RNA-Seq, DNase-Seq, Hi-C and numerous other types of…

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