Main logo
?

High-throughput sequencing data analysis bioinformatics software tools

High-throughput sequencing (HTS) or next-generation sequencing (NGS) technologies have revolutionized the biomedical research during the past decade. The ability to sequence multiple DNA molecules in parallel allows to produce quickly very large…

High-throughput sequencing applications

Most recent bioinformatics tools

G T A T C G C T A
BayCount
Desktop

BayCount

Infers tumor transcriptional heterogeneity using RNA-Seq count data. BayCount…

Infers tumor transcriptional heterogeneity using RNA-Seq count data. BayCount is a Bayesian matrix decomposition model that takes into account both random effects between samples and specific genetic…

G T A T C G C T A
AQMM
Desktop

AQMM Absolute Quantification of Metagenome and Metatranscriptome

Realizes quantification by combining metagenome and metatranscriptome data.…

Realizes quantification by combining metagenome and metatranscriptome data. AQMM is made for performing absolute quantification (AQ) of parallel metagenome and metatranscriptome dataset. The AQMM…

G T A T C G C T A
Clinker
Desktop

Clinker

Allows users to explore fusion genes discovered in RNA-seq data. Clinker allows…

Allows users to explore fusion genes discovered in RNA-seq data. Clinker allows raw reads involved in the discovery of fusion genes to be viewed and inspected in IGV. It generates annotations of…

G T A T C G C T A
TRUmiCount
Algorithm

TRUmiCount

Removes the biases inherent in raw Unique Molecular Identifier (UMI) counts and…

Removes the biases inherent in raw Unique Molecular Identifier (UMI) counts and produces unbiased and low-noise measurements of transcript abundance. In these conditions, TRUmiCount can realize…

Most popular analytical software

A A A
VENNY
Web

VENNY

Allows comparison of lists with Venn Diagrams. VENNY is a web-server,…

Allows comparison of lists with Venn Diagrams. VENNY is a web-server, consisting in a single standard html file that can be used off-line.

G T A T C G C T A
SAMtools
Desktop

SAMtools

A suite of programs for interacting with high-throughput sequencing data. It…

A suite of programs for interacting with high-throughput sequencing data. It can manipulate alignments in the SAM/BAM/CRAM formats : reading, writing, editing, indexing, viewing and converting…

G T A T C G C T A
Bowtie
Desktop

Bowtie

A short read aligner that aligns short DNA sequences (reads) to the human…

A short read aligner that aligns short DNA sequences (reads) to the human genome at a rate of over 25 million 35-bp reads per hour. Bowtie indexes the genome with a Burrows-Wheeler index to keep its…

G T A T C G C T A
HOMER
Desktop

HOMER Hypergeometric Optimization of Motif EnRichment

A suite of tools for Motif Discovery and next-gen sequencing analysis. HOMER…

A suite of tools for Motif Discovery and next-gen sequencing analysis. HOMER contains many useful tools for analyzing ChIP-Seq, GRO-Seq, RNA-Seq, DNase-Seq, Hi-C and numerous other types of…

Information

By using OMICtools you acknowledge that you have read and accepted the terms of the end user license agreement.