High-throughput sequencing data analysis bioinformatics software tools

High-throughput sequencing (HTS) or next-generation sequencing (NGS) technologies have revolutionized the biomedical research during the past decade. The ability to sequence multiple DNA molecules in parallel allows to produce quickly very large…

High-throughput sequencing applications

Most recent bioinformatics tools

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SSR Locator
Desktop

SSR Locator Simple Sequence Repeat Locator

Allows users to discover single sequence repeats. SSR Locator permits (1)…

Allows users to discover single sequence repeats. SSR Locator permits (1) simple sequence repeats (SSR) discovery, (2) primer design, and (3) polymerase chain reaction (PCR) simulation between the…

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GhostKOALA
Web

GhostKOALA

Allows metagenome annotation. GhostKOALA is an automatic annotation server that…

Allows metagenome annotation. GhostKOALA is an automatic annotation server that utilizes the GHOSTX program for searching the non-redundant GENES database. The software is recommended for annotating…

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Hangout
Desktop

Hangout

Cleans PSI-BLAST generated profiles of erroneous extensions caused by domain…

Cleans PSI-BLAST generated profiles of erroneous extensions caused by domain insertions. Hangout is a procedure that clean the profile and prepare it for consequent remote homology searches with…

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scell_hicpipe
Desktop

scell_hicpipe Single cell Hi-C Pipeline

Allows users to identify thousands of simultaneous chromatin contacts in a…

Allows users to identify thousands of simultaneous chromatin contacts in a single cell. The Single cell Hi-C Pipeline consists in a set of scripts that process single cell Hi-C libraries. It is able…

Most popular analytical software

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SAMtools
Desktop

SAMtools

A suite of programs for interacting with high-throughput sequencing data. It…

A suite of programs for interacting with high-throughput sequencing data. It can manipulate alignments in the SAM/BAM/CRAM formats : reading, writing, editing, indexing, viewing and converting…

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Bowtie
Desktop

Bowtie

A short read aligner that aligns short DNA sequences (reads) to the human…

A short read aligner that aligns short DNA sequences (reads) to the human genome at a rate of over 25 million 35-bp reads per hour. Bowtie indexes the genome with a Burrows-Wheeler index to keep its…

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SNPdryad
Web

SNPdryad

A computational method that can predict deleterious effect of amino acid…

A computational method that can predict deleterious effect of amino acid substitutions occurred in human proteins. SNPdryad outperforms other leading algorithms in accurately predicting deleterious…

ZENBU
Web

ZENBU

Enables data exploration through "on-demand" data processing and…

Enables data exploration through "on-demand" data processing and interactive linked-visualizationsthus enabling concurrent views from the same mere primary sequence alignment data which…

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