SEECER specifications
- Unique identifier:
- OMICS_26081
- Software type:
- Application/Script
- Restrictions to use:
- None
- Programming languages:
- R
- Version:
- 0.1.3
- Requirements:
- GNU Scientific Library, SeqAn, JELLYFISH, OPENMP API
- Name:
- SEquencing Error CorrEction for Rna reads
- Interface:
- Command line interface
- Operating system:
- Unix/Linux, Mac OS, Windows
- Computer skills:
- Advanced
- Stability:
- Stable
- Maintained:
- Yes
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SEECER distribution
download
SEECER support
Documentation
- Documentation: http://sb.cs.cmu.edu/seecer/downloads/manual.pdf
Maintainer
- Ziv Bar-Joseph <>
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Publications
-
(Le et al., 2013)
Probabilistic error correction for RNA sequencing.
Nucleic Acids Res.
PMID: 23558750 DOI: 10.1093/nar/gkt215
Institution(s)
Machine Learning Department, Carnegie Mellon University, Pittsburgh, PA, USA; Lane Center for Computational Biology, Carnegie Mellon University, Pittsburgh, PA, USA; Department of Biological Sciences, Carnegie Mellon University, Pittsburgh, PA, USA
Funding source(s)
Supported by National Institutes of Health (NIH) [1RO1 GM085022] and National Science Foundation (NSF) [DBI-0965316 award].
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