SEECER specifications
Information
| Unique identifier | OMICS_26081 |
|---|---|
| Name | SEECER |
| Alternative name | SEquencing Error CorrEction for Rna reads |
| Software type | Application/Script |
| Interface | Command line interface |
| Restrictions to use | None |
| Operating system | Unix/Linux, Mac OS, Windows |
| Programming languages | R |
| Computer skills | Advanced |
| Version | 0.1.3 |
| Stability | Stable |
| Requirements | GNU Scientific Library, SeqAn, JELLYFISH, OPENMP API |
| Maintained | Yes |
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Documentation
- Documentation: http://sb.cs.cmu.edu/seecer/downloads/manual.pdf
Maintainer
- person_outline Ziv Bar-Joseph <>
SEECER article
library_books
Probabilistic error correction for RNA sequencing.
2013 Nucleic Acids Res
PMID: 23558750
DOI: 10.1093/nar/gkt215
SEECER institution(s)
Machine Learning Department, Carnegie Mellon University, Pittsburgh, PA, USA; Lane Center for Computational Biology, Carnegie Mellon University, Pittsburgh, PA, USA; Department of Biological Sciences, Carnegie Mellon University, Pittsburgh, PA, USA
SEECER funding source(s)
Supported by National Institutes of Health (NIH) [1RO1 GM085022] and National Science Foundation (NSF) [DBI-0965316 award].
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