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Sequgio specifications

Information


Unique identifier OMICS_01290
Name Sequgio
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


No version available

Maintainer


  • person_outline Yudi Pawitan

Publication for Sequgio

Sequgio citation

library_books

Comprehensive landscape of subtype specific coding and non coding RNA transcripts in breast cancer

2016
Oncotarget
PMCID: 5356595
PMID: 27634900
DOI: 10.18632/oncotarget.11998

[…] 58 problematic transcripts/genes that are difficult to measure accurately. Fortunately, none of them are in the top discovered subtype-specific or subtype-coexpression isoforms in our study. Although Sequgio used in our study shows better accuracy than many common isoform quantification methods [], issue of the problematic genes might still happen. For convenience, we supply the information of pro […]


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Sequgio institution(s)
Department of Medical Epidemiology and Biostatistics, Karolinska Institutet, Stockholm, Sweden; Department of Molecular and Translational Medicine, University of Brescia, Italy; Department of Mathematics and Statistics, La Trobe University, Melbourne, VIC, Australia
Sequgio funding source(s)
Supported by Swedish Research Council (in part) 621-2009-5900.

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