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Associated diseases

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SeqVISTA specifications

Information


Unique identifier OMICS_22833
Name SeqVISTA
Software type Toolkit/Suite
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Computer skills Medium
Version 1.81
Stability Stable
Maintained Yes

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Maintainers


  • person_outline Zhiping Weng <>
  • person_outline Martin Frith <>
  • person_outline Zhenjun Hu <>

Publication for SeqVISTA

SeqVISTA in publications

 (2)
PMCID: 2950845
PMID: 20949136
DOI: 10.1371/journal.pone.0012827

[…] (stage 5 in ) for the 100 sequences. the transmembrane regions are determined by tmhmm and the glutamate binding regions are determined by sequence alignment. through the visualization tool seqvista , we can see the relative positions and lengths for tm's and glutamate binding regions in each protein. 22 of the 100 can be identified as having the characteristic topology of glutamate […]

PMCID: 2576457
PMID: 19002242
DOI: 10.1371/journal.pntd.0000330

[…] neutrality test 1.2 software (http://www.hgc.sph.uth.tmc.edu/neutrality_test/). tajima's d test was used to detect deviation of the ks /kn ratios from neutrality . smpomuc genes were annotated using seqvista 1.9 software; paralogous sequence blocks were color-coded and highlighted to visualize recombination between members of the gene family., prediction of glycosylation sites in smpomuc amino […]

SeqVISTA institution(s)
Bioinformatics Program, Boston University, Boston, MA, USA; Program for Population Genetics, Harvard University, Boston, MA, USA; Department of Biomedical Engineering, Boston University, Boston, MA, USA
SeqVISTA funding source(s)
Supported by NSF grant DBI-0078194 and NIH grant 1P20GM066401-01.

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