SeqWare statistics

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Associated diseases

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SeqWare specifications

Information


Unique identifier OMICS_01221
Name SeqWare
Alternative name SolexaTools
Software type Framework/Library
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Java, Javascript
Database management system NoSQL
Parallelization MapReduce
License GNU General Public License version 3.0
Computer skills Advanced
Version 1.1.2
Stability Stable
High performance computing Yes
Maintained Yes

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Documentation


Publication for SeqWare

SeqWare in publications

 (3)
PMCID: 4466500
PMID: 26125026
DOI: 10.1155/2015/904541

[…] data sources with a small number of hbase tables. this is an important result, since, in ngs analysis, the ability to cross data with other databases is a key for discovery. another example is the seqware query engine developed by o'connor et al. []. the authors use the hbase nosql database and deploy their application on a cloud to offer high performance for access and queries on ngs human […]

PMCID: 3727129
PMID: 23957008
DOI: 10.1155/2013/901578

[…] of cloud computing services. shows a schematic drawing of the cloud-based ngs analysis. , recently exploratory efforts have been made in cloud-based dna sequence storage. o'connor et al. [] created seqware query engine using cloud computing technologies to support databasing and query of information from thousands of genomes. basespace is a scalable cloud-computing platform […]

PMCID: 3040523
PMID: 21210976
DOI: 10.1186/1471-2105-11-S12-S1

[…] been used for multiple sequence alignment []. in regard to hbase use, brian o’connor of university of north carolina at chapel hill recently described the use of hbase as a scalable backend for the seqware query engine [] at the bosc 2010 meeting. recent work on the design of the genome analysis toolkit at the broad institute has created a framework that supports mapreduce programming […]


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SeqWare institution(s)
UNC Lineberger Comprehensive Cancer Center, University of North Carolina, Chapel Hill, NC, USA; Department of Human Genetics, University of California, Los Angeles, CA, USA
SeqWare funding source(s)
Supported by grants from the NINDS (U24NS), the Dani Saleh Brain Tumor Fund, and the Henry Singleton Brain Tumor Fund.

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