seqyclean specifications


Unique identifier OMICS_20624
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Input format SFF, FASTQ
Output format GZIP
Biological technology Illumina, Roche
Operating system Unix/Linux, Mac OS
Programming languages C, C++, Shell (Bash)
License MIT License
Computer skills Advanced
Version 1.9.11
Stability Stable
Maintained Yes



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  • person_outline Ilya Zhbannikov <>

seqyclean citation

PMCID: 4466345

[…] (illumina paired-end). a total of 85,465,786 reads of 100 bp in length (approximately 8.5 gb) corresponding to more than 400 fold of sampling depth were analyzed using fastqc (ver. 0.10.1) and seqyclean (ver. 1.8.10) to filter low quality sequences (phred quality below 20)., in addition, an isolate of the opposite mating-type (ssc39a) was partially sequenced using a bac genomic library […]

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