SeroBA specifications

Information


Unique identifier OMICS_20599
Name SeroBA
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Input data Illumina paired-end reads
Input format FASTQ format
Output data The predicted serotype with detailed information, An assembly of the cps locus sequences.
Output format TXT, TSV
Biological technology Illumina
Operating system Unix/Linux, Mac OS, Windows
Programming languages Python, Shell (Bash)
License GNU General Public License version 3.0
Computer skills Advanced
Version 0.1.3
Stability Stable
Maintained Yes

Download


Versioning


Add your version

Documentation


Maintainers


  • person_outline Jacqueline A. Keane <>
  • person_outline Andrew Page <>

Additional information


https://github.com/sanger-pathogens/pathogen-informatics-training

SeroBA article

SeroBA institution(s)
Pathogen Informatics, Wellcome Trust Sanger Institute, Hinxton, Cambs, UK; Department of Mathematics and Computer Science, Freie Universit├Ąt Berlin, Berlin, Germany; Nuffield Department of Medicine, University of Oxford, Oxford, UK; Infection Genomics, Wellcome Trust Sanger Institute, Hinxton, Cambs, UK

SeroBA reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review SeroBA