SeroBA specifications

Unique identifier:
OMICS_20599
Interface:
Command line interface
Input data:
Illumina paired-end reads
Output data:
The predicted serotype with detailed information, An assembly of the cps locus sequences.
Biological technology:
Illumina
Programming languages:
Python, Shell (Bash)
Computer skills:
Advanced
Stability:
Stable
Software type:
Pipeline/Workflow
Restrictions to use:
None
Input format:
FASTQ format
Output format:
TXT, TSV
Operating system:
Unix/Linux, Mac OS, Windows
License:
GNU General Public License version 3.0
Version:
0.1.3
Maintained:
Yes

versioning

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SeroBA distribution

download

SeroBA support

Documentation

Maintainers

  • Jacqueline A. Keane <>
  • Andrew Page <>

Additional information

https://github.com/sanger-pathogens/pathogen-informatics-training

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Publications

Institution(s)

Pathogen Informatics, Wellcome Trust Sanger Institute, Hinxton, Cambs, UK; Department of Mathematics and Computer Science, Freie Universit├Ąt Berlin, Berlin, Germany; Nuffield Department of Medicine, University of Oxford, Oxford, UK; Infection Genomics, Wellcome Trust Sanger Institute, Hinxton, Cambs, UK

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