Troubles

Permits to eliminate many false positive hits in gene set enrichment analysis (GSEA). SetRank discards gene sets that have initially been flagged as significant, if their significance is only due to the overlap with another gene set. It is a highly specific tool for GSEA. The tool returns either reliable results or no results at all, making it ideally suited for querying multiple gene set databases simultaneously.

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SetRank forum

SetRank versioning

No versioning.

SetRank classification

SetRank specifications

Software type:
Package
Restrictions to use:
None
Output format:
CSV
Programming languages:
R
Computer skills:
Advanced
Stability:
Stable
Source code URL:
https://cran.r-project.org/src/contrib/SetRank_1.1.0.tar.gz/
Interface:
Command line interface
Input data:
A gene set collection or a list of genes.
Operating system:
Unix/Linux, Mac OS, Windows
License:
GNU General Public License version 3.0
Version:
1.1.0

SetRank support

Documentation

Maintainer

Credits

Publications

Institution(s)

Interfaculty Bioinformatics Unit and SIB Swiss Institute of Bioinformatics, University of Bern, Berne, Switzerland; Department of Clinical Research, University of Bern, Berne, Switzerland; Vital-IT, SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland; SIB Technology, SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland

Funding source(s)

Supported by the University of Bern and the Directorate of Teaching and Research of the Insel Gruppe Bern.

Link to literature

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