- Unique identifier:
- Command line interface, Graphical user interface
- Input data:
- A gene expression matrix, where the rows are genes and the columns are single cells.
- Programming languages:
- Computer skills:
- Source code URL:
- Software type:
- Restrictions to use:
- Operating system:
- Unix/Linux, Mac OS, Windows
- GNU General Public License version 3.0
- ggplot2, cowplot, Matrix, Java
- Satija Lab <>
- Paul Hoffman <>
No open topic.
(Satija et al., 2015)
Spatial reconstruction of single-cell gene expression data.
PMID: 25867923 DOI: 10.1038/nbt.3192
(Butler and Satija, 2017)
Integrated analysis of single cell transcriptomic data across conditions, technologies, and species.
(Butler et al., 2018)
Integrating single-cell transcriptomic data across different conditions, technologies, and species
Broad Institute of MIT and Harvard, Cambridge, MA, USA; Department of Molecular and Cellular Biology, Harvard University, Cambridge, MA, USA; Center for Brain Science, Harvard University, Cambridge, MA, USA; Harvard Stem Cell Institute, Harvard University, Cambridge, MA, USA; Center for Systems Biology, Harvard University, Cambridge, MA, USA; Howard Hughes Medical Institute, Department of Biology, Massachusetts Institute of Technology, Cambridge, MA, USA
Supported by F32 HD075541, the Jane Coffin Childs Memorial Fund for Medical Research, the NIH, NHGRI CEGS 1P50HG006193, the Klarman Cell Observatory, and HHMI.
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