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SFA-SPA specifications


Unique identifier OMICS_07617
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages C++, Perl
License GNU General Public License version 2.0
Computer skills Advanced
Stability Stable
Maintained Yes


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  • person_outline Shibu Yooseph

Publication for SFA-SPA

SFA-SPA citation


Metagenome and Metatranscriptome Analyses Using Protein Family Profiles

PLoS Comput Biol
PMCID: 4939949
PMID: 27400380
DOI: 10.1371/journal.pcbi.1004991

[…] short peptide reads are recruited by mapping all reads to the verified contigs that are generated in the previous step., targeted protein assembly can be performed using peptide assembler (e.g. sfa-spa []) on hmm-graspx recruited short peptides., targeted nucleotide assembly can be performed using nucleotide assembler (e.g. spades []) on the original nucleotide sequences that correspond […]

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SFA-SPA institution(s)
Informatics Department, J Craig Venter Institute, La Jolla, CA, USA

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