SFA-SPA statistics

You need an account to access this content

info

Citations per year

Citations chart
info

Popular tool citations

chevron_left Protein sequence reconstruction chevron_right
Popular tools chart
info

Tool usage distribution map

Tool usage distribution map
info

Associated diseases

Associated diseases

SFA-SPA specifications

Information


Unique identifier OMICS_07617
Name SFA-SPA
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages C++, Perl
License GNU General Public License version 2.0
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


Add your version

Maintainer


  • person_outline Shibu Yooseph <>

Publication for SFA-SPA

SFA-SPA in pipeline

2016
PMCID: 4939949
PMID: 27400380
DOI: 10.1371/journal.pcbi.1004991

[…] well with the query, which may be redundant. therefore, we recommend using other de novo assembly programs to further refine the set of output contigs (e.g. spades [] for nucleotide assembly and sfa-spa [] for protein assembly). in summary, the hmm-graspx based mg/mt analysis pipeline allows for estimation of gene/transcript abundances and targeted reconstruction of both protein […]

SFA-SPA in publication

PMCID: 4939949
PMID: 27400380
DOI: 10.1371/journal.pcbi.1004991

[…] short peptide reads are recruited by mapping all reads to the verified contigs that are generated in the previous step., targeted protein assembly can be performed using peptide assembler (e.g. sfa-spa []) on hmm-graspx recruited short peptides., targeted nucleotide assembly can be performed using nucleotide assembler (e.g. spades []) on the original nucleotide sequences that correspond […]

SFA-SPA institution(s)
Informatics Department, J Craig Venter Institute, La Jolla, CA, USA

SFA-SPA reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review SFA-SPA