Protocols

SFselect specifications

Information


Unique identifier OMICS_09814
Name SFselect
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Python
Computer skills Advanced
Stability Stable
Requirements
Numpy, SciKit-learn
Maintained Yes

Versioning


No version available

Documentation


Maintainer


  • person_outline Roy Ronen

Publication for SFselect

SFselect citation

call_split

Extremely low nucleotide diversity in the X linked region of papaya caused by a strong selective sweep

2016
Genome Biol
PMCID: 5125041
PMID: 27890017
DOI: 10.1186/s13059-016-1095-9
call_split See protocol

[…] F ST was estimated using pair-wise comparisons of the gynodioecious lines and dioecious lines in the program SFselect (https://github.com/rronen/SFselect). Nucleotide diversity (π) and Tajima’s D were calculated in sliding windows of 100 kb with 25 kb overlap using a suite of programs in SAMtools []. Δπ was […]

SFselect institution(s)
Bioinformatics and Systems Biology Program, University of California, San Diego, CA, USA; The Blavatnik School of Computer Science and Department of Molecular Microbiology and Biotechnology, Tel-Aviv University, Tel-Aviv, Israel; International Computer Science Institute, Berkeley, CA, USA; Department of Computer Science and Engineering, University of California, San Diego, CA, USA

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