SFselect statistics

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Citations per year

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Popular tool citations

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Tool usage distribution map

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Associated diseases

Associated diseases

SFselect specifications

Information


Unique identifier OMICS_09814
Name SFselect
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Python
Computer skills Advanced
Stability Stable
Requirements
Numpy, SciKit-learn
Maintained Yes

Versioning


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Documentation


Maintainer


  • person_outline Roy Ronen <>

Publication for SFselect

SFselect in publication

PMCID: 5125041
PMID: 27890017
DOI: 10.1186/s13059-016-1095-9

[…] results were plotted in distruct v1.1 []. the pca was performed using pco software., f st was estimated using pair-wise comparisons of the gynodioecious lines and dioecious lines in the program sfselect (https://github.com/rronen/sfselect). nucleotide diversity (π) and tajima’s d were calculated in sliding windows of 100 kb with 25 kb overlap using a suite of programs in samtools []. δπ […]


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SFselect institution(s)
Bioinformatics and Systems Biology Program, University of California, San Diego, CA, USA; The Blavatnik School of Computer Science and Department of Molecular Microbiology and Biotechnology, Tel-Aviv University, Tel-Aviv, Israel; International Computer Science Institute, Berkeley, CA, USA; Department of Computer Science and Engineering, University of California, San Diego, CA, USA

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