SG-ADVISER mtDNA specifications

Information


Unique identifier OMICS_20443
Name SG-ADVISER mtDNA
Interface Web user interface
Restrictions to use None
Input data Mitochondrial DNA reads.
Input format SAM/BAM
Output data Information about the parameters used, all the annotations for each variant the predicted haplogroup for each sample all the variants and a browsable table consisting of the most relavant fields relative to the variant annotation: the full name of each sample, the location on the mitocohnodrial chromosome, position in the mitocondrial chromosome + the alternative allele format, the reference and alternative alleles, the amino acid change, Genoytpe, the number of times this position is covered by reads and the heteroplasmic fraction.
Output format HTML, TSV, VCF
License GNU General Public License version 3.0
Computer skills Basic
Stability Stable
Maintained Yes

Maintainers


  • person_outline Ali Torkamani <>
  • person_outline Manuel Rueda <>

Additional information


https://genomics.scripps.edu/mtdna/help.html

SG-ADVISER mtDNA article

SG-ADVISER mtDNA institution(s)
The Scripps Translational Science Institute, Scripps Health, and The Scripps Research Institute, La Jolla, CA, USA
SG-ADVISER mtDNA funding source(s)
Supported by NIH grants U54GM114833, U01 HG006476 and 5UL1 RR025774.

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