SGA-ICE specifications

Information


Unique identifier OMICS_14851
Name SGA-Iteratively Correcting Errors
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Input data The read data.
Input format FASTQ
Output data A shell script that contains all commands to run iterative error correction of the given read data with the given parameters.
Biological technology Illumina
Operating system Unix/Linux
Programming languages Python
License MIT License
Computer skills Advanced
Stability Stable
Requirements SGA
Maintained Yes

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  • person_outline Michael Hiller <>

SGA-ICE article

SGA-ICE institution(s)
Max Planck Institute of Molecular Cell Biology and Genetics, Dresden, Germany; Max Planck Institute for the Physics of Complex Systems, Dresden, Germany
SGA-ICE funding source(s)
This work was supported by the Max Planck Society and fellowship 2012/01319-8 from Fundaçao de Amparo à Pesquisa do Estado de Sao Paulo (FAPESP).

SGA-ICE review

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Jeremie Vidal-Dupiol

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I used SGA-ICE to correct illumina shotgun sequencing before de novo genome assembly. The results was in accordance with my expectation. I recommend !

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