sgRNA Scorer specifications

Information


Unique identifier OMICS_15503
Name sgRNA Scorer
Interface Web user interface
Restrictions to use None
Input data The genomic sequence, user's email address, the CRISPR system, the spacer length, the PAM sequence and orientation.
Input format FASTA
Output data The guide RNA sequences and scores.
Programming languages Python
Computer skills Basic
Version 2.0
Stability Stable
Maintained Yes

Documentation


Maintainer


  • person_outline Raj Chari <>

Information


Unique identifier OMICS_15503
Name sgRNA Scorer
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input data The genomic sequence.
Input format FASTA
Output data The guide RNA sequences and scores.
Operating system Unix/Linux, Mac OS
Programming languages Python
Computer skills Advanced
Version 2.0
Stability Stable
Requirements BioPython, Sci-kit learn
Maintained Yes

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Documentation


Maintainer


  • person_outline Raj Chari <>

Publication for sgRNA Scorer

sgRNA Scorer institution(s)
Department of Genetics, Harvard Medical School, Boston, MA, USA; Wyss Institute for Biologically Inspired Engineering, Harvard University, Cambridge, MA, USA
sgRNA Scorer funding source(s)
This work was supported by NIH grant P50 HG005550.

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