SH3PepInt specifications

Information


Unique identifier OMICS_30091
Name SH3PepInt
Interface Web user interface
Restrictions to use None
Input format FASTA
Computer skills Basic
Version 1.0.0
Stability Stable
Maintained Yes

Maintainer


  • person_outline Rolf Backofen

Publications for SH3PepInt

SH3PepInt citation

library_books

Tir Is Essential for the Recruitment of Tks5 to Enteropathogenic Escherichia coli Pedestals

2015
PLoS One
PMCID: 4633291
PMID: 26536015
DOI: 10.1371/journal.pone.0141871

[…] ains [], which have many potential interaction partners. Since Tir was essential for Tks5 recruitment we hypothesized that Tks5 and Tir could interact in the pedestal. In silico analysis of Tir using SH3PepInt software [] predicted two putative binding sites (N11GNHLIPPAPPLPSQ25 and V61DSRDIPGLPTNPSR75) for SH3 domain containing proteins such as SRC or nephrocystin-1. Neither a full Tks5 knock-out […]

SH3PepInt institution(s)
Bioinformatics Group, Department of Computer Science, Freiburg, Germany; Centre for Biological Signalling Studies (BIOSS), University of Freiburg, Freiburg, Germany
SH3PepInt funding source(s)
Supported by the Bundesministerium fur Bildung und Forschung (e-bio; FKZ 0316174A) and the Excellent Initiative of the German Federal and State Governments (EXC 294).

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