Shannon pipeline protocols

Edit this pipeline Shannon pipeline computational protocol

Shannon pipeline specifications

Information

Unique identifier	OMICS_02631
Name	Shannon pipeline
Interface	Web user interface
Restrictions to use	None
License	Commercial
Computer skills	Basic
Stability	Stable
Maintained	Yes

Taxon

Primates
- Homo sapiens

Publication for Shannon pipeline

Interpretation, stratification and evidence for sequence variants affecting mRNA splicing in complete human genome sequences.

2013 Genomics Proteomics Bioinformatics

PMCID: 4357664

PMID: 23499923

DOI: 10.1016/j.gpb.2013.01.008

Shannon pipeline IN pipeline

Splicing mutation analysis reveals previously unrecognized pathways in lymph node-invasive breast cancer

2014

PMCID: 4231324

PMID: 25394353

DOI: 10.1038/srep07063

[…] protein coding mutations were annotated by annovar8 and splicing mutations with the shannon human splicing pipeline18 (table 1, see supplementary tables s2–4 for a list of all mutations). the shannon pipeline predicted significantly more splicing mutations than reported by tcga, because the information-theoretic method employed enables analyses of variants beyond exon boundaries […]

Shannon pipeline institution(s)

Department of Computer Science, Middlesex College, The University of Western Ontario, London, ON, Canada

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