Shannon pipeline protocols

Shannon pipeline specifications

Information


Unique identifier OMICS_02631
Name Shannon pipeline
Interface Web user interface
Restrictions to use None
License Commercial
Computer skills Basic
Stability Stable
Maintained Yes

Taxon


  • Primates
    • Homo sapiens

Publication for Shannon pipeline

Shannon pipeline IN pipeline

2014
PMCID: 4231324
PMID: 25394353
DOI: 10.1038/srep07063

[…] protein coding mutations were annotated by annovar8 and splicing mutations with the shannon human splicing pipeline18 (table 1, see supplementary tables s2–4 for a list of all mutations). the shannon pipeline predicted significantly more splicing mutations than reported by tcga, because the information-theoretic method employed enables analyses of variants beyond exon boundaries […]

Shannon pipeline institution(s)
Department of Computer Science, Middlesex College, The University of Western Ontario, London, ON, Canada

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