Shannon specifications


Unique identifier OMICS_11187
Name Shannon
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data Single-end reads or paired-end reads
Input format fasta or fastq
Operating system Unix/Linux, Mac OS
License GNU General Public License version 3.0
Computer skills Advanced
Stability Stable
Python, Metis, NUMPY, CVXOPT, Quorum, Jellyfish, GNU-Parallel
Maintained Yes




No version available



  • person_outline Lior Pachter
  • person_outline David N Tse

Publication for Shannon

Shannon institution(s)
University of Washington, Seattle, WA, USA; University of California, Berkeley, CA, USA; University of California, Los Angeles, CA, USA; Stanford University, CA, USA
Shannon funding source(s)
Supported in part by the Center for Science of In- formation, an NSF Science and Technology Center, under grant agreement CCF-0939370, a gift from Qualcomm Inc, and by NIH under award number R01HG008164; the Center for the Science of Information; in part by the Center for the Science of Information and in part by the National Human Genome Research Institute of the National Institutes of Health under award number R01HG008164.

Shannon reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review Shannon