Shannon specifications

Unique identifier:
OMICS_11187
Interface:
Command line interface
Input data:
Single-end reads or paired-end reads
Operating system:
Unix/Linux, Mac OS
Computer skills:
Advanced
Requirements:
Python, Metis, NUMPY, CVXOPT, Quorum, Jellyfish, GNU-Parallel
Software type:
Package/Module
Restrictions to use:
None
Input format:
fasta or fastq
License:
GNU General Public License version 3.0
Stability:
Stable
Maintained:
Yes

versioning

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Shannon distribution

download

Shannon support

Documentation

Maintainers

  • Lior Pachter <>
  • David N Tse <>

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Credits

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Publications

Institution(s)

University of Washington, Seattle, WA, USA; University of California, Berkeley, CA, USA; University of California, Los Angeles, CA, USA; Stanford University, CA, USA

Funding source(s)

Supported in part by the Center for Science of In- formation, an NSF Science and Technology Center, under grant agreement CCF-0939370, a gift from Qualcomm Inc, and by NIH under award number R01HG008164; the Center for the Science of Information; in part by the Center for the Science of Information and in part by the National Human Genome Research Institute of the National Institutes of Health under award number R01HG008164.

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