ShapeGTB specifications


Unique identifier OMICS_33155
Name ShapeGTB
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
Computer skills Advanced
Stability Stable
Xgboost, DNAshapeR
Maintained Yes




No version available


  • person_outline Dariusz Plewczynski
  • person_outline Lucjan Wyrwicz

Publication for ShapeGTB

ShapeGTB institution(s)
Laboratory of Bioinformatics and Biostatistics, Maria Sklodowska-Curie Memorial Cancer Centre and Institute of Oncology, Warsaw, Poland; Laboratory of Functional and Structural Genomics, Centre of New Technologies, University of Warsaw, Warsaw, Poland; Faculty of Mathematics and Information Science, Warsaw University of Technology, Warsaw, Poland
ShapeGTB funding source(s)
Supported by the Polish National Science Centre (2014/15/B/ST6/05082 and DEC-2012/06/M/NZ2/00112), Foundation for Polish Science, the Department of Science and Technology, India under Indo-Polish/ Polish-Indo project (DST/INT/POL/P-36/2016), European Cooperation in Science and Technology action (COST BM1405, BM1408) and 1U54DK107967-01 “Nucleome Positioning System for Spatiotemporal Genome Organization and Regulation” grant within 4DNucleome NIH program.

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