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SHARCGS

Assembles short-read (25–40-mer) data with high accuracy and speed. SHARCGS allows to exploit novel sequencing technologies by assembling sequence contigs de novo with high confidence and by outperforming existing assembly algorithms in terms of speed and accuracy. Its efficiency was tested on BAC inserts from three eukaryotic species, on two yeast chromosomes, and on two bacterial genomes (Haemophilus influenzae, Escherichia coli).

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SHARCGS forum

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SHARCGS classification

SHARCGS specifications

Software type:
Package/Module
Restrictions to use:
None
Computer skills:
Advanced
Maintained:
Yes
Interface:
Command line interface
Operating system:
Unix/Linux
Stability:
Stable

SHARCGS distribution

versioning

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No versioning.

SHARCGS support

Documentation

Maintainer

  • Heinz Himmelbauer <>

Credits

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Publications

Institution(s)

Max-Planck-Institute for Molecular Genetics, Berlin-Dahlem, Germany; Institute for Functional Genomics, Computational Diagnostics, University of Regensburg, Regensburg, Germany

Link to literature

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