SGS specifications

Unique identifier:
OMICS_26772
Software type:
Application/Script
Restrictions to use:
None
Input format:
PED
Operating system:
Unix/Linux
License:
GNU General Public License version 3.0
Stability:
Stable
Maintained:
Yes
Name:
Shared Genomic Segment
Interface:
Command line interface
Input data:
The pedigree structure and genotype data for all probands and a linkage disequilibrium model.
Output data:
A header with all arguments passed in from the command line, list of probands, meioses count between those probands, simulations completed, and version info.
Programming languages:
Java
Computer skills:
Advanced
Source code URL:
https://gitlab.com/camplab/sgs/

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SGS distribution

download

SGS support

Documentation

Maintainer

  • Nicola Camp <>

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Credits

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Publications

Institution(s)

University of Utah School of Medicine, Salt Lake City, UT, USA; Weill Cornell Medical College, New York, NY, USA; Memorial Sloan Kettering Cancer Center, New York, NY, USA; Mayo Clinic, Rochester, MN, USA; Icahn School of Medicine at Mount Sinai, New York, NY, USA; ProfileXpert, Lyon, France; International Agency for Research on Cancer, Lyon, France; INSERM 1052/CNRS 5286/UCBL, Lyon, France

Funding source(s)

Supported by funding from the Utah Genome Project, (NJC); Utah Hematology Disease Oriented Team, (NJC); Leukemia and Lymphoma Society, grant number 6067-09 (NJC); and National Institutes of Health (NIH), grant numbers: R01-CA-107476 (SVR), R01-CA-134674 (NJC), R21-CA-152336 (NJC), R01-CA-163353 (NJC), R01-CA-167824 (SML), R01-CA-168762 (SVR), R21-CA-191896 (CMV), R01-DK-091374, R01-DK093151, R01-MH-094400 (HC), R01-MH-099134 (HC), S10-OD-018522, and T15-LM-007124; by the Huntsman Cancer Institute (HCI), and the HCI Cancer Center Support grant, P30-CA-42014 from the NIH; by the National Cancer Institute’s SEER Program, Contract No. HHSN261201300017I, with additional support from the Utah Department of Health, and the University of Utah, and by the National Center for Advancing Translational Sciences of the National Institutes of Health under Award Number UL1TR001067.

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