SONS specifications

Unique identifier:
OMICS_14389
Software type:
Package/Module
Restrictions to use:
None
Input format:
LIST, NAMES
Output format:
SONS, SONS.LTT, SONS.OTU
Programming languages:
C++
Computer skills:
Advanced
Stability:
Stable
Name:
Shared OTUs and Similarity
Interface:
Command line interface
Input data:
DOTUR-formatted file and a tab-delineated file containing the names of each sequence in the first column and the library designation in the second column.
Output data:
Data to construct collector’s curves for each comparison and distance level, and the frequency of sequences from each library found in each OTU.
Operating system:
Unix/Linux, Mac OS, Windows
License:
GNU General Public License version 2.0
Version:
1.0
Maintained:
Yes

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SONS distribution

download

SONS support

Documentation

Maintainer

  • Jo Handelsman <>

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Publications

Institution(s)

Department of Plant Pathology, University of Wisconsin—Madison, Madison, WI, USA

Funding source(s)

This work was supported by a USDA postdoctoral fellowship in Soil Biology (2003-35107-13856) and by the NSF Microbial Observatories program (MCB-0132085), the Howard Hughes Medical Institute, and the University of Wisconsin—Madison College of Agricultural and Life Sciences.

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