SHEBA pipeline

SHEBA specifications


Unique identifier OMICS_03651
Alternative name Structural Homology by Environment-Based Alignment
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS
Computer skills Advanced
Stability Stable
Maintained Yes


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Publication for Structural Homology by Environment-Based Alignment

SHEBA citation

PMCID: 2705363

[…] methods, and that it is fast enough to scan protein structure databases in a practical time, unlike the exact solution using cplex. it is, however, not as fast as some existing methods such as sheba and vast, and the tableausearch dynamic programming approximation introduced by [18] is faster still. these methods, however, cannot be used to find substructures or non-linear matchings., […]

SHEBA institution(s)
Laboratory of Molecular Biology, Division of Basic Sciences, National Cancer Institute, National Institutes of Health, Bethesda, MD, USA

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