Sheep Atlas specifications

Information


Unique identifier OMICS_21534
Name Sheep Atlas
Restrictions to use None
Community driven No
Data access Browse
User data submission Not allowed
Maintained Yes

Maintainers


  • person_outline Emily Clark
  • person_outline David Hume
  • person_outline David Hume
  • person_outline Alan Archibald

Publication for Sheep Atlas

Sheep Atlas citations

 (2)
library_books

Cross species inference of long non coding RNAs greatly expands the ruminant transcriptome

2018
PMCID: 5926538
PMID: 29690875
DOI: 10.1186/s12711-018-0391-0

[…] 00 bp and was not associated, on the same strand, with a known protein-coding locus. The fourfold difference in the length of each longlist can be attributed to the relative size of each dataset. The sheep atlas contains 8 times as many RNA-seq libraries, spans multiple developmental stages (from embryonic to adult), and has a subset of its samples that was specifically prepared to ensure the comp […]

library_books

Integration of quantitated expression estimates from polyA selected and rRNA depleted RNA seq libraries

2017
BMC Bioinformatics
PMCID: 5470212
PMID: 28610557
DOI: 10.1186/s12859-017-1714-9

[…] hese reads are unlikely to be assembled into variants of an existing gene because if such a gene existed, Kallisto would have mapped reads to it.Based upon our analysis of much larger datasets in the sheep atlas, the variance introduced by the RNA selection method is much greater than from any other batch effect, although these must still be accounted for as a matter of best practice (see review [ […]

Sheep Atlas institution(s)
The Roslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh, Edinburgh, Scotland; Department of Integrative and Computational Biology, The Scripps Research Institute, La Jolla, CA, USA; Mater Research Institute-University of Queensland, Translational Research Institute, Woolloongabba, QLD, Australia
Sheep Atlas funding source(s)
Supported by a Biotechnology and Biological Sciences Research Council (BBSRC) Grant BB/L001209/1 (’Functional Annotation of the Sheep Genome’); BBSRC Institute Strategic Program Grants: ’Farm Animal Genomics’ (BBS/E/D/ 20211550), ’Transcriptomes, Networks and Systems’ (BBS/E/D/20211552) and ’Blue Prints for Healthy Animals’ (BB/P013732/1); Edinburgh Genomics is partly supported through core grants from BBSRC (BB/J004243/1), NERC (R8/H10/56) and the Medical Research Council (MRC) (MR/ K001744/1).

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