SherLoc2 specifications

Information


Unique identifier OMICS_26874
Name SherLoc2
Interface Web user interface
Restrictions to use None
Input data Some amino acid sequences.
Input format FASTA
Programming languages Python
License GNU General Public License version 3.0
Computer skills Basic
Source code URL http://www-bs2.informatik.uni-tuebingen.de/services/blum/SherLoc2/SherLoc2-26-10-2009.tar.gz
Maintained No

Maintainer


This tool is not available anymore.

Publication for SherLoc2

SherLoc2 in publications

 (9)
PMCID: 5784984
PMID: 29370287
DOI: 10.1371/journal.pone.0191841

[…] 2008), mtdefmd2 (medtr.8g012835.1, mtr.7210.1.s1_at), mtdefmd3 (medtr.8g012875, mtr.3215.1.s1_at), and mtdefmd4 (medtr.8g012885, mtr.31214.1.s1_at) were analyzed with signalp [], plant-mploc [], and sherloc2 []., medicago truncatula gaertn. jemalong a17 (thierry huguet, inra toulouse, france) was used for all plant experiments. sterile rhizophagus irregularis daom197198 spores (premiertech, […]

PMCID: 4460676
PMID: 26040285
DOI: 10.1186/1471-2164-16-S5-S11

[…] control; 1 = present; 0 = absent., the subcellular localizations of the identified proteins were predicted using the web version of the sherloc 2 software (http://abi.inf.uni-tuebingen.de/services/sherloc2). as expected, most proteins identified in the union sets of the groups of patients with meningitis were predicted to be located in the cytoplasm (46%) or at the extracellular space (45%). […]

PMCID: 4423424
PMID: 25951314
DOI: 10.1038/srep10104

[…] from 5 to 9 (). we predicted that these proteins would be localized to the membranes of different subcellular compartments. in agreement with this prediction, analysis using the wolf psort and sherloc2 servers predicted that all c. gattii zip proteins were located at the plasma membrane. phylogenetic analysis employing characterized fungal zinc transporters from the zip family as well […]

PMCID: 4150949
PMID: 25124718
DOI: 10.1186/1475-2875-13-315

[…] localization predictions. transmembrane proteins were identified using scampi [], tmhmm [] and topcons []. subcellular localization predictors used to make consensus predictors were: wolf psort [], sherloc2 [], eslpred2 [], euk mploc [] and cello []., gene ontology (go) functions were also predicted using a combination of blast [], pfam [], interpro [] and specialized go predictors including: […]

PMCID: 4100115
PMID: 24886813
DOI: 10.3390/ijms15069670

[…] only the sequence information and is capable of predicting 11 sites for eukaryotic sequences with a high accuracy rate (89% for animal and 91% for plant proteins). its performance was compared to sherloc2 [] (predicts 11 sites, requires sequence and text-based input together with phylogenetic profiles and gene ontology (go) terms) and wegoloc [] (predicts 10 sites, uses sequence and weighted […]


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SherLoc2 institution(s)
Division for Simulation of Biological Systems, Center for Bioinformatics Tubingen, Eberhard-Karls-Universitat Tubingen, Germany; School of Computing, Queen’s University, Kingston, ON, Canada
SherLoc2 funding source(s)
Supported by the LGFG Promotionsverbund “Pflanzliche Sensorhistidinkinasen”, an NSERC Discovery Grant 298292-04, CFI New Opportunities Award 10437, and an Ontario Early Researcher Award #ER07-04-085.

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