ShiftDetector statistics

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Associated diseases

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ShiftDetector specifications

Information


Unique identifier OMICS_15088
Name ShiftDetector
Interface Web user interface
Restrictions to use None
Input format ABI
Output data Frameshift size and the putative sequence of the molecule
Output format EXP
Programming languages Perl
Computer skills Basic
Version 2.0
Stability Stable
Source code URL http://cowry.agri.huji.ac.il/DATA_SET/frshp.html
Maintained Yes

Maintainer


  • person_outline Eyal Seroussi <>

Publication for ShiftDetector

ShiftDetector in publications

 (2)
PMCID: 3557274
PMID: 23382983
DOI: 10.1371/journal.pone.0054835

[…] of 30% or more. the variation of the deletion coordinates was higher for child than for bcv., the study also revealed the relative sensitivity and accuracy of indel size detection of child with shiftdetector and indelligent software. bcv outperformed shiftdetector and indelligent in sensitivity as well as in specificity of the indel size detection; it demonstrated the same sensitivity […]

PMCID: 2429969
PMID: 18654614
DOI: 10.1371/journal.pcbi.1000113

[…] original template sequences even if these were unrelated., to our knowledge, the only tool developed so far to extract superimposed sequences from an individual mixed trace is the web application shiftdetector (while this manuscript was in production, the authors became aware that a proprietary algorithm capable of decoding individual mixed traces resulted from single indels up to 25 bp […]


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ShiftDetector institution(s)
Institute of Animal Science, Volcani Center, Rishon, Israel; Information Systems Department, The Burnham Institute, La Jolla, CA, USA

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