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ShiftDetector specifications

Information


Unique identifier OMICS_15088
Name ShiftDetector
Interface Web user interface
Restrictions to use None
Input format ABI
Output data Frameshift size and the putative sequence of the molecule
Output format EXP
Programming languages Perl
Computer skills Basic
Version 2.0
Stability Stable
Source code URL http://cowry.agri.huji.ac.il/DATA_SET/frshp.html
Maintained Yes

Maintainer


  • person_outline Eyal Seroussi

Publication for ShiftDetector

ShiftDetector citation

library_books

Decoding of Superimposed Traces Produced by Direct Sequencing of Heterozygous Indels

2008
PLoS Comput Biol
PMCID: 2429969
PMID: 18654614
DOI: 10.1371/journal.pcbi.1000113

[…] y reconstruction is obtained. Incorporating a test of the statistical significance of reconstructed optimal solutions in the future would give the method additional robustness.Indelligent outperforms ShiftDetector by producing a complete, biallelic reconstruction for the entire input fragment, including single or multiple indels. Even more importantly, it decodes all or nearly all input ambiguous […]


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ShiftDetector institution(s)
Institute of Animal Science, Volcani Center, Rishon, Israel; Information Systems Department, The Burnham Institute, La Jolla, CA, USA

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