Shimmer specifications


Unique identifier OMICS_03612
Name Shimmer
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data Some aligned sequence reads from a tumor and its matched normal tissue.
Input format BAM
Output format VCF
Operating system Unix/Linux
Programming languages C, Perl, R
Computer skills Advanced
Version 0.2
Stability Stable
Requirements git, samtools, “statmod” package
Maintained Yes



Add your version



  • person_outline ncy F. Hansen <>

Additional information

Publication for Shimmer

Shimmer institution(s)
Genome Technology Branch, NHGRI/NIH, Bethesda, MD, USA; Cancer Genetics Branch, NHGRI/NIH, Bethesda, MD, USA; Department of Molecular Cell Biology, Weizmann Institute of Science, Rehovot, Israel
Shimmer funding source(s)
Supported by Intramural Research Program of the National Human Genome Research Institute, National Institutes of Health.

Shimmer reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review Shimmer