Shimmer specifications

Information


Unique identifier OMICS_03612
Name Shimmer
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data Some aligned sequence reads from a tumor and its matched normal tissue.
Input format BAM
Output format VCF
Operating system Unix/Linux
Programming languages C, Perl, R
Computer skills Advanced
Version 0.2
Stability Stable
Requirements git, samtools, “statmod” package
Maintained Yes

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Versioning


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Documentation


Maintainer


  • person_outline ncy F. Hansen <>

Additional information


https://github.com/nhansen/Shimmer/blob/master/DOCUMENTATION

Publication for Shimmer

Shimmer institution(s)
Genome Technology Branch, NHGRI/NIH, Bethesda, MD, USA; Cancer Genetics Branch, NHGRI/NIH, Bethesda, MD, USA; Department of Molecular Cell Biology, Weizmann Institute of Science, Rehovot, Israel
Shimmer funding source(s)
Supported by Intramural Research Program of the National Human Genome Research Institute, National Institutes of Health.

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