Shinyheatmap specifications

Information


Unique identifier OMICS_13012
Name Shinyheatmap
Interface Web user interface
Restrictions to use None
Input format csv
Output format png
Programming languages R
Computer skills Basic
Stability No
Source code URL https://codeload.github.com/Bohdan-Khomtchouk/shinyheatmap/zip/master
Maintained Yes

Documentation


Maintainer


  • person_outline Bohdan B. Khomtchouk

Information


Unique identifier OMICS_13012
Name Shinyheatmap
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
License GNU General Public License version 3.0
Computer skills Advanced
Stability Stable
Requirements
RStudio
Source code URL https://codeload.github.com/Bohdan-Khomtchouk/shinyheatmap/zip/master
Maintained Yes

Versioning


No version available

Documentation


Maintainer


  • person_outline Bohdan B. Khomtchouk

Publication for Shinyheatmap

Shinyheatmap citation

library_books

Transcriptomic analysis of Perilla frutescens seed to insight into the biosynthesis and metabolic of unsaturated fatty acids

2018
BMC Genomics
PMCID: 5863459
PMID: 29562889
DOI: 10.1186/s12864-018-4595-z

[…] anttfdb.cbi.pku.edu.cn/) by BLAST with a cut-off of 1eāˆ’ā€‰5. Beased on the average of RPKM of genes across RNA-seq library replicates for a condition. Hierarchical clustering was performed using online Shinyheatmap server (http://shinyheatmap.com/). Before clustering, genes were filtered out that displayed low expression (<ā€‰5 RPKM) in all conditions. The average linkage method was used for cluster g […]

Shinyheatmap institution(s)
Center for Therapeutic Innovation and Department of Psychiatry and Behavioral Sciences, University of Miami, School of Medicine, Miami, FL, USA
Shinyheatmap funding source(s)
Funded by the United States Department of Defense.

Shinyheatmap review

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Johanna Nelkner's avatar image

Johanna Nelkner

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Web
PNG download does not work, plus I would like to be able to display the actual values in the heatmap. More colors would also be beneficial. Despite of that it is a nice and easy to handle Heatmapgenerator if you don't want to do it in R.