SHOGoiN specifications


Unique identifier OMICS_05628
Name SHOGoiN
Alternative names SHOGoiN Cell Database, CELLPEDIA
Restrictions to use None
Database management system MySQL
Community driven No
Data access Browse
User data submission Not allowed
Maintained Yes


  • Primates
    • Homo sapiens


  • person_outline Wataru Fujibuchi

Publications for SHOGoiN

SHOGoiN citation


Cell type discovery and representation in the era of high content single cell phenotyping

BMC Bioinformatics
PMCID: 5763450
PMID: 29322913
DOI: 10.1186/s12859-017-1977-1

[…] anch alone.The CL is used as a reference annotation vocabulary for a number of research projects and database resources, including the ENCODE [] and FANTOM5 (e.g. []) projects, and the ImmPort [] and SHOGoiN/CELLPEDIA [] databases. Perhaps more importantly, a software package, flowCL, has recently been developed that allows for the automated mapping of cell populations identified from high-dimensi […]

SHOGoiN institution(s)
Center for iPS Cell Research and Application, Kyoto University, Shogoin, Sakyoku, Kyoto, Japan; Charite Universitatsmedizin Berlin, Berlin-Brandenburg Center for Regenerative Therapies, Berlin, Germany; National Institute for Biological Standards and Control, an Operating Centre of the Medicines and Healthcare Products Regulatory Agency, South Mimms, UK; Department of Genetics and Human Genetics Institute of New Jersey, Rutgers, The State University of New Jersey, Piscataway, NJ, USA
SHOGoiN funding source(s)
Supported in part by a grant from Core Center for iPS Cell Research, Research Center Network for Realization of Regenerative Medicine, Japan Agency for Medical Research and Development; a grant from Research on Regenerative Medicine for Clinical Application; Health and Labor Sciences Research Grants from the Ministry of Health, Labour and Welfare, Japan; the U.K. Stem Cell Bank Phase IV grant from the Medical Research Council and Biotechnology and Biological Sciences Research Council; National Institute of Mental Health Grant 5U24MH068457-13; and National Institute of Neurological Disorders and Stroke Grant 1U24NS095914-01.

SHOGoiN reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review SHOGoiN