SHORE pipeline

SHORE specifications

Information


Unique identifier OMICS_01136
Name SHORE
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Biological technology Illumina, Roche
Operating system Unix/Linux, Mac OS
Programming languages C++
Computer skills Advanced
Stability Beta
Maintained Yes
Wikipedia http://shore.sourceforge.net/wiki/

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Maintainers


  • person_outline Stephan Ossowski <>
  • person_outline Detlef Weigel <>

Publication for SHORE

SHORE citation

2015
PMCID: 4578092

[…] expression omnibus database (accession number gse36216). a single probe mapped to the short cpg island located within the endoglin gene promoter region. beta values for probes mapping to cpg island ‘shore areas' (regions flanking cpg islands, up to 2 kb up and downstream) were also analysed, as mounting evidence suggests that shore areas may also directly affect gene expression (irizarry et al., […]

SHORE institution(s)
Department of Molecular Biology, Max Planck Institute for Developmental Biology, Tübingen, Germany

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