ShortBRED specifications

Unique identifier:
OMICS_16928
Software type:
Package/Module
Restrictions to use:
None
Input format:
FASTA
Programming languages:
Python
Stability:
Stable
Maintained:
Yes
Name:
Short Better Representative Extract Dataset
Interface:
Command line interface
Input data:
Proteins of interest, reference set of proteins, short nucleotide reads.
Operating system:
Unix/Linux
Computer skills:
Advanced
Requirements:
Python, BLASTP, USEARCH, MUSCLE, CD-HIT

versioning

tutorial arrow
×
Upload and version your source code
Get a DOI for each update to improve tool traceability. Archive your releases so the community can easily visualize progress on your work.
Facilitate your tool traceability
Sign up for free to upload your code and get a DOI

No versioning.

ShortBRED distribution

download

ShortBRED support

Documentation

Maintainer

  • Gautam Dantas <>

forum

tutorial arrow
×
Communicate with other users
Participate in the forum to get support for using tools. Ask questions about technical specifications.
Take part in the discussion
Sign up for free to ask question and share your advices

No open topic.

Credits

tutorial arrow
×
Promote your skills
Define all the tasks you managed and assign your profile the appropriate badges. Become an active member.
Promote your work
Sign up for free to badge your contributorship

Publications

Institution(s)

Department of Biostatistics, Harvard T.H. Chan School of Public Health, Boston, MA, USA; Center for Genome Sciences and Systems Biology, Washington University School of Medicine, St. Louis, MI, USA; Broad Institute, Cambridge, MA, USA; Centre for Integrative Biology (CIBIO), University of Trento, Trento, Trentino, Italy; Department of Pathology and Immunology, Washington University School of Medicine, St. Louis, MI, USA; Department of Biomedical Engineering, Washington University, St. Louis, MI, USA

Funding source(s)

This work was supported by NIH grants of a Director’s New Innovator Award, DP2DK098089 and R01GM099538, the March of Dimes Foundation 6-FY12-394, NIH grants R01HG005969, NSF grant DBI-1053486, ARO grant W911NF-11-1-0473, Danone Research grant PLF-5972-GD, a Mr. and Mrs. Spencer T. Olin Fellowship at Washington University and a NSF Graduate Research Fellow (DGE-11143954).

User review

tutorial arrow
×
Vote up tools and offer feedback
Give value to tools and make your expertise visible
Give your feedback on this tool
Sign up for free to join and share with the community

0 user reviews

star_border star_border star_border star_border star_border
star star star star star

0 user reviews

star_border star_border star_border star_border star_border
star star star star star

No review has been posted.

Related Tools