SLiMSearch specifications

Information


Unique identifier OMICS_07750
Name Short, Linear Motif Search
Alternative name SLiMSearch4
Interface Web user interface
Restrictions to use None
Input data A motif consensus describing the specificity determinants of a motif binding pocket and a species of interest.
Output data The consensus matches with overlapping feature and motif attribute annotations.
Output format JSON or TDT
Computer skills Basic
Version 4.0
Stability Stable
Maintained Yes

Taxon


  • Animals
    • Bos taurus
    • Caenorhabditis elegans
    • Danio rerio
    • Drosophila melanogaster
    • Gallus gallus
    • Homo sapiens
    • Mus musculus
    • Rattus norvegicus
    • Xenopus laevis
    • Xenopus tropicalis
  • Fungi
    • Candida albicans
    • Saccharomyces cerevisiae
    • Schizosaccharomyces pombe
  • Plants
    • Arabidopsis thaliana
  • Protists
    • Dictyostelium discoideum
    • Leishmania major
    • Plasmodium falciparum
    • Trichomonas vaginalis
  • Viruses

Maintainers


  • person_outline Denis Shields <>
  • person_outline Norman E. Davey <>

SLiMSearch articles

SLiMSearch institution(s)
Conway Institute of Biomolecular & Biomedical Research, University College Dublin, Dublin, Ireland; UCD School of Medicine & Medical Science, University College Dublin, Dublin, Ireland
SLiMSearch funding source(s)
Supported by a Science Foundation Ireland Starting Investigator Research Grant [13/SIRG/].

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