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ShortRead | A bioconductor package for input, quality assessment and exploration of high-throughput sequence data

A package for input, quality assessment, manipulation and output of high-throughput sequencing data. ShortRead extends Bioconductor with tools useful in the initial stages of short-read DNA sequence analysis. Main functionalities include data input, quality assessment, data transformation and access to downstream analysis opportunities. It is an important gateway to use of Bioconductor for processing high-throughput DNA sequence data. ShortRead data structures allow convenient manipulation of data, such as filtering reads based on sequence characteristics.

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ShortRead forum

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ShortRead classification

ShortRead specifications

Unique identifier:
OMICS_01076
Interface:
Command line interface
Operating system:
Unix/Linux, Mac OS, Windows
License:
Artistic License version 2.0
Stability:
Stable
Software type:
Package/Module
Restrictions to use:
None
Programming languages:
R
Computer skills:
Advanced
Maintained:
Yes

ShortRead distribution

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No versioning.

ShortRead support

Documentation

Maintainer

  • Martin Morgan <>

Credits

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Publications

Institution(s)

Program in Computational Biology, Fred Hutchinson Cancer Research Center, Seattle, WA, USA

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