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Protocols

SHORTY specifications

Information


Unique identifier OMICS_00030
Name SHORTY
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


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Documentation


SHORTY citations

 (5)
library_books

Social media and digital technology use among Indigenous young people in Australia: a literature review

2016
PMCID: 4881203
PMID: 27225519
DOI: 10.1186/s12939-016-0366-0

[…] Sharing through public social media forums such as the @IndigenousX Twitter account can provide opportunities for Indigenous people to participate in the public forum. The account was nominated for a Shorty Award, which recognizes achievement in social media. The main reasons identified for the nomination were “that the account shares Indigenous knowledge and stories, challenges stereotypes and re […]

call_split

Overexpressing the Multiple Stress Responsive Gene At1g74450 Reduces Plant Height and Male Fertility in Arabidopsis thaliana

2015
PLoS One
PMCID: 4619001
PMID: 26485022
DOI: 10.1371/journal.pone.0140368
call_split See protocol

[…] .The locations of the exonic T-DNA insertions were confirmed by PCR using MangoTaq DNA Polymerase and dNTPs (Bioline). Genomic DNA was extracted from N60000 (Col-0) and mutant leaves according to the Shorty method described previously []. lists the left and right genomic primers that were chosen for each line based on outputs from the T-DNA primer design programme (http://signal.salk.edu/tdnaprim […]

library_books

Survival of immediately versus delayed loaded short implants: A prospective case series study

2015
PMCID: 4523261
PMID: 26034926
DOI: 10.4317/medoral.20407

[…] at the surgeon’s criteria. Either a larger diameter implant was used or the implant was left submerged. The insertion torque value was recorded by a drilling unit. The usage of short implants alone (“Shorty bridges” for the purposes of the study) or combined with longer implants (mixed bridges) depended on the length of the opposite arch and bone availability.- Surgical ProcedureThe surgical proce […]

library_books

Next Generation Sequence Assembly: Four Stages of Data Processing and Computational Challenges

2013
PLoS Comput Biol
PMCID: 3861042
PMID: 24348224
DOI: 10.1371/journal.pcbi.1003345

[…] es between them and the total number of N can be estimated easily using paired-end constraints . Some assemblers include scaffolding modules (e.g., Euler-SR, ALLPATHS-LG, Velvet, SGA, SOAPdenovo, and Shorty) (see ) while others are stand-alone scaffolders such as Bambus , , SSPACE , SOPRA , MIP scaffolder , Opera , and SCARPA (see ).There are many challenges currently facing the stand-alone scaff […]

library_books

Crystallizing short read assemblies around seeds

2009
BMC Bioinformatics
PMCID: 2648751
PMID: 19208115
DOI: 10.1186/1471-2105-10-S1-S16

[…] To verify how well SHORTY is performing we determine the accuracy of a contig by mapping it back to the reference genome. MUMmer [], which uses an efficient method based on suffix tree, is used to find these matches. Fo […]

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