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SHREC specifications

Information


Unique identifier OMICS_01110
Name SHREC
Alternative name Short Read Error Correction
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Java
License GNU General Public License version 2.0
Computer skills Advanced
Version 2.2
Stability Stable
Maintained Yes

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  • person_outline Jan Schroder <>

Publication for Short Read Error Correction

SHREC in publications

 (61)
PMCID: 5805695
PMID: 29422503
DOI: 10.1038/s41467-018-02874-0

[…] tpz1-ccq1 interaction plays a critical role in enforcing transcriptional repression at telomeric and sub-telomeric regions by promoting telomere localization of the chromatin regulatory complexes shrec (snf2/hdac-containing repressor complex) and clrc (clr4 histone h3k9 methyltransferase complex),–., a systematic telomere length analysis of fission yeast gene deletion strains has identified […]

PMCID: 5786294
PMID: 29373580
DOI: 10.1371/journal.pone.0190666

[…] a single ray to get the sdf, which accounts for the significant performance improvement. a timing statistics table of quantitative comparison is available in , where the test models are from the shrec′11 3d shape dataset., numerous geometry processing tasks, such as mesh reconstruction and mean curvature estimation, require the knowledge of the surface normals. unlike continuous surfaces, […]

PMCID: 5933923
PMID: 29722648
DOI: 10.7554/eLife.32911.024

[…] and is critical for establishment of heterochromatin (; ). h3k9me-containing nucleosomes provide a binding platform for hp1 family chromodomain proteins, including swi6. hp1-mediated recruitment of shrec, which harbors both a hdac and a snf2-like nucleosome remodeler (), creates a positive feedback loop to ensure recursive h3k9 methylation, recruitment of hp1 and spreading of shrec along […]

PMCID: 5778466
PMID: 29216371
DOI: 10.1093/nar/gkx1223

[…] ccq1 also has a role in the suppression of telomere elongation, when coupled with the clr4 histone h3 methyl-transferase complex and the clr3 histone deacetylase and nucleosome remodelling complex, shrec. we have dissected the functions of ccq1 by establishing a ccq1-est1 fusion system, which bypasses the telomerase recruitment step. we demonstrate that ccq1 forms two distinct complexes […]

PMCID: 5919735
PMID: 29187422
DOI: 10.1534/g3.117.300341

[…] protein swi6 (; ); the clr7 (a.k.a. raf2, cmc2, and dos2), clr8 (a.k.a. raf1, cmc1, and dos1), and rik1 subunits of the clr4-associated complex clrc (; ); the clr1, clr2, and clr3 subunits of the shrec histone deacetylase complex (; ; ; ; ); clr5 (); the clr6 histone deacetylase (); and the ubc4 e2 ubiquitin ligase (). this mutant assortment mirrors mutants isolated in drosophila () and mouse […]


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SHREC institution(s)
Institut für Informatik, Christian-Albrecht-Universität Kiel, Kiel, Germany; School of Computer Science and Information Technology, RMIT University, VIC, Australia; Department of Computer Science and Software Engineering, University of Melbourne, VIC, Australia; School of Computer Engineering, Nanyang Technological University, Singapore
SHREC funding source(s)
Supported by the Australian Research Council, and by the NICTA Victorian Research Laboratory.

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