SHRiMP specifications

Unique identifier:
OMICS_00685
Alternative name:
SHRiMP2
Interface:
Command line interface
Input data:
The reads and the genome files.
Output format:
SAM
Computer skills:
Advanced
Stability:
Stable
Maintained:
Yes
Name:
SHort Read Mapping Program
Software type:
Package/Module
Restrictions to use:
None
Input format:
FASTA
Operating system:
Unix/Linux, Mac OS
Version:
2.2.3
Source code URL:
http://compbio.cs.toronto.edu/shrimp/releases/SHRiMP_2_2_3.src.tar.gz

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SHRiMP distribution

download

SHRiMP support

Maintainer

  • Matei David <>

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Credits

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Publications

Institution(s)

Department of Computer Science, Princeton University, Princeton, NJ, USA; Department of Computer Science, University of Toronto, Toronto, ON, USA; Department of Computer Science, University of Western Ontario and Donnelly Centre, University of Toronto, Toronto, ON, USA

Funding source(s)

Supported by MITACS, CIHR, and Life Technologies research grants, NSF grant (CCF-0832797).

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