Protocols

Shufflet specifications

Information


Unique identifier OMICS_17457
Name Shufflet
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input format Fasta format
Output format Fasta format
Operating system Unix/Linux
Programming languages C
Computer skills Advanced
Stability No
Maintained No

Versioning


No version available

Maintainer


This tool is not available anymore.

Publication for Shufflet

Shufflet citations

 (2)
call_split

Using support vector machine combined with auto covariance to predict protein–protein interactions from protein sequences

2008
Nucleic Acids Res
PMCID: 2396404
PMID: 18390576
DOI: 10.1093/nar/gkn159
call_split See protocol

[…] proteins can be deemed not to interact with each other (). Thus, the negative data set was prepared by shuffling the sequences of right-side interacting pairs with k-let (k = 1,2,3) counts using the Shufflet program (). […]

library_books

Stem loop structures in prokaryotic genomes

2006
BMC Genomics
PMCID: 1590033
PMID: 16820051
DOI: 10.1186/1471-2164-7-170

[…] The program Shufflet [] was used to generate random sequences and to shuffle bacterial genomes by preserving k-lets of different lengths. In order to shuffle sequences with k-let higher than 6, Shufflet was compi […]

Shufflet institution(s)
Laboratoire Génome et Informatique, Université de Versailles, Saint-Quentin-en-Yvelines, Versailles, France
Shufflet funding source(s)
This work was supported by grand 125679/410 from the Norwegian Research Council.

Shufflet reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review Shufflet