Shufflet specifications


Unique identifier OMICS_17457
Name Shufflet
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input format Fasta format
Output format Fasta format
Operating system Unix/Linux
Programming languages C
Computer skills Advanced
Stability No
Maintained No


No version available


This tool is not available anymore.

Publication for Shufflet

Shufflet citations


Using support vector machine combined with auto covariance to predict protein–protein interactions from protein sequences

Nucleic Acids Res
PMCID: 2396404
PMID: 18390576
DOI: 10.1093/nar/gkn159
call_split See protocol

[…] proteins can be deemed not to interact with each other (). Thus, the negative data set was prepared by shuffling the sequences of right-side interacting pairs with k-let (k = 1,2,3) counts using the Shufflet program (). […]


Stem loop structures in prokaryotic genomes

BMC Genomics
PMCID: 1590033
PMID: 16820051
DOI: 10.1186/1471-2164-7-170

[…] The program Shufflet [] was used to generate random sequences and to shuffle bacterial genomes by preserving k-lets of different lengths. In order to shuffle sequences with k-let higher than 6, Shufflet was compi […]

Shufflet institution(s)
Laboratoire Génome et Informatique, Université de Versailles, Saint-Quentin-en-Yvelines, Versailles, France
Shufflet funding source(s)
This work was supported by grand 125679/410 from the Norwegian Research Council.

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