SIDDBASE

Provides stress-induced DNA duplex destabilization (SIDD) profiles of microbial genomes. SIDDBASE is a database that gives users an overview of the SIDD sites in their selected genome, and their positions relative to the annotated genes. This information facilitates the identification of regulatory elements, such as promoter-containing regions, in the genomic sequence. In addition, the original SIDD profiles (raw data and graphs) can be visualized and made available for downloading.

SIDDBASE specifications

Dataset

Information

Unique identifier	OMICS_21211
Name	SIDDBASE
Restrictions to use	None
Community driven	No
Data access	File download, Browse
User data submission	Not allowed
Version	1.0
Maintained	No

Maintainer

This tool is not available anymore.

Publication for SIDDBASE

SIDDBASE: a database containing the stress-induced DNA duplex destabilization (SIDD) profiles of complete microbial genomes

2006 Nucleic Acids Res

PMCID: 1347370

PMID: 16381890

DOI: 10.1093/nar/gkj007

SIDDBASE institution(s)

UC Davis Genome Center, University of California at Davis, One Shields Avenue, Davis, CA, USA

SIDDBASE funding source(s)

Supported by grants from the National Science Foundation (DBI-0416764) and the National Institutes of Health (RO1-GM68903).

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