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SIDEpro specifications

Information


Unique identifier OMICS_03564
Name SIDEpro
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Publication for SIDEpro

SIDEpro in publications

 (3)
PMCID: 4718530
PMID: 26605751
DOI: 10.1021/acs.analchem.5b03238

[…] interest., the authors thank the national metrology center (cenam) of mexico, for providing the facilities to conduct this study. the authors also thank the professional development system (sidepro) of the same center for fellow support, cnrdogms/senasica and fondo cibiogem for providing the necessary reagents for assay implementation, and ibq edna alejandra matus cundapí and qfb héctor […]

PMCID: 4613528
PMID: 26188042
DOI: 10.1042/BJ20141485

[…] of the other two models. the ptb2–s610d model was created in coot [] employing the built-in rotamer library []. the model of ptb2 with phosphorylated ser610 (ptb2–ps610) was prepared with the sidepro server [], with all atoms fixed except for cβ and oγ of ser610. the phosphorylated serine side chain is assumed to be not protonated and carries a charge of −2., md was performed […]

PMCID: 3585406
PMID: 23468611
DOI: 10.1371/journal.pcbi.1002924

[…] of side chain orientations. the importance of accurate predictions of side chain rotamers for molecular biology is illustrated by numerous studies – including developing tools such as scwrl , and sidepro . mcce takes advantage of these developments and uses dunbrack conformer libraries , to sample the side chain rotamers within the calculations of the pka's of titratable residues and thus […]


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SIDEpro institution(s)
Department of Computer Science and Institute for Genomics and Bioinformatics, University of California, Irvine, CA, USA

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