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SIFT BLink specifications

Information


Unique identifier OMICS_26256
Name SIFT BLink
Interface Web user interface
Restrictions to use None
Input data A protein sequence, some related sequences or aligned sequences.
Input format FASTA
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Pauline Ng <>

Publication for SIFT BLink

SIFT BLink in publications

 (34)
PMCID: 5456385
PMID: 28575107
DOI: 10.1371/journal.pone.0178776

[…] human gene mutation database (hgmd). predictive analysis tools were used to determine the pathogenicity status of novel variants. missense mutations were analyzed by sift (http://sift.jcvi.org/www/sift_blink_submit.html), cadd (http://cadd.gs.washington.edu/score) and mutation taster (http://www.mutationtaster.org/), while all frameshift variants were predicted by provean […]

PMCID: 5722523
PMID: 29228571
DOI: 10.18632/oncotarget.18243

[…] databases []. to predict possible impact of non-synonymous variants in exons, in-silico function was predicted by several software, including sift (http://sift.jcvi.org/www/sift_blink_submit.html), mutationtaster (http://www.mutationtaster.org/), mutationassessor (http://mutationassessor.org), provean http://provean.jcvi.org/index.php and polyphen-2 […]

PMCID: 5363706
PMID: 28272408
DOI: 10.1038/srep43830

[…] associated with the non-homeobox region of hoxb13 gene were predicted using the following in silico servers: the sift (sorting intolerant from tolerant) program (http://sift.bii.a-star.edu.sg/www/sift_blink_submit.html) predicts the deleterious or damaging nature of the missense snps based upon sequence homology based prediction, physical properties of amino acids and also by calculating […]

PMCID: 5303298
PMID: 28187756
DOI: 10.1186/s12881-017-0377-8

[…] substitutions in human mitochondrial trnas []., nonsynonymous mtdna mutations were analysed for their pathogenic potential by using polyphen-2 version 2.2.2 [] http://genetics.bwh.harvard.edu/pph2/, sift blink [] http://sift.jcvi.org/www/sift_blink_submit.html, pmut [, ] http://mmb2.pcb.ub.es/pmut/ and snap [] http://rostlab.org/services/snap/ algorithms. pathogenicity classes were ascertained […]

PMCID: 5101573
PMID: 27881988
DOI: 10.3389/fpls.2016.01671

[…] discussion and their technical assistance., www.agilent.com , http://www.thermofisher.com , http://www.genedata.com , http://www.ebi.ac.uk/tools/msa/clustalw2/ , http://sift.jcvi.org/www/sift_blink_submit.html , http://pantherdb.org/ , the supplementary material for this article can be found online at: […]

SIFT BLink institution(s)
Faculty of Electrical Engineering and Computing, University of Zagreb, Zagreb, Croatia; Computational and Systems Biology Group, Genome Institute of Singapore, Agency for Science, Technology and Research (A*STAR), Singapore, Singapore; Bioinformatics Institute, Agency for Science, Technology and Research, Singapore, Singapore
SIFT BLink funding source(s)
Supported in part by A*STAR and the Croatian Science Foundation (project no. 7353, Algorithms for Genome Sequence Analysis).

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