Sigma specifications

Information


Unique identifier OMICS_29594
Name Sigma
Alternative names SImple Greedy Multiple Alignment, Sigma-align, Sigma-2, Sigma-1
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages C, Other
Computer skills Advanced
Version 2.0
Stability Beta
Source code URL https://www.imsc.res.in/~rsidd/sigma2/src/sigma-2.0-BETA-20100322.tar.gz
Maintained Yes

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Publications for SImple Greedy Multiple Alignment

Sigma citations

 (2)
library_books

PhyloGibbs MP: Module Prediction and Discriminative Motif Finding by Gibbs Sampling

2008
PLoS Comput Biol
PMCID: 2518514
PMID: 18769735
DOI: 10.1371/journal.pcbi.1000156

[…] ra, D. yakuba, and D. simulans. Orthology identification was made using multiple sequence alignments from VN Iyer, DA Pollard and MB Eisen (personal communication). The sequences were re-aligned with Sigma 1.1.3. PhyloGibbs-MP was run without priors and with priors constructed from the FlyReg database (see below). Stubb (version 2.1) and Cluster-Buster were run using the FlyReg priors. Cis-Module […]

library_books

Transformation of the output of spinal lamina I neurons after nerve injury and microglia stimulation underlying neuropathic pain

2007
PMCID: 2093929
PMID: 17900333
DOI: 10.1186/1744-8069-3-27

[…] Drugs were applied directly on the top of the spinal dorsal horn using the chamber described above. R(+)DIOA (Sigma, 100 μM) was first prepared in ethanol at 100× concentration before being diluted in 0.9% NaCl. Bicuculline HCl (Tocris, 50 μM) was dissolved in saline 0.9%NaCl. Microglia were suspended in PBS. […]

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