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Popular tool citations

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Associated diseases

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Sigma specifications

Information


Unique identifier OMICS_18959
Name Sigma
Alternative name sigma.js
Interface Application programming interface
Restrictions to use None
Programming languages Javascript
License MIT License
Computer skills Basic
Version 0.12.7
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Guillaume Plique <>

Sigma in publications

 (4)
PMCID: 5829562
PMID: 29688362
DOI: 10.1093/database/bay007

[…] local regulatory networks. these displays distinguish between regulators and targets, and include a mouse-over capability that highlights internal sub-networks (). the networks are drawn using the sigma.js visualization library (sigmajs.org). , future directions for regulation curation at sgd include expansion of the revised data model to incorporate regulatory complexes in addition to single […]

PMCID: 5826274
PMID: 29360038
DOI: 10.7554/eLife.30649.056

[…] are hosted at our laboratory website (https://www.ibp.ucla.edu/research/white/genenetwork.html) along with high resolution static pdf versions. interactive figures were exported from gephi using the sigma.js exporter plugin (https://github.com/oxfordinternetinstitute/gephi-plugins)., in weighted coexpression networks, each node (i.e. gene) is connected to every other node in the network, even […]

PMCID: 5737845
PMID: 28575165
DOI: 10.1093/dnares/dsx022

[…] go information with host-related genes. we also search the pubmed database to retrieve reports related to queried circrnas. a google© chart is used to display a diagram of circrna abundance, whereas sigma.js is used to show a circrna, mrna, and mirna interaction network. circrnas can be browsed by their chromosomal location, classification, or tissue-specific expression pattern. we also provide […]

PMCID: 4458913
PMID: 26051359
DOI: 10.1038/srep10888

[…] was written in groovy (backend) and javascript (frontend). the disease network was visualized using the gephi graph visualization tool, and the disease network browser was generated with gephi’s sigma-js export plugin (http://blogs.oii.ox.ac.uk/vis/). all graphs are visualized using a force-directed layout., how to cite this article: hoehndorf, r. et al. analysis of the human diseasome using […]


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