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Information
| Unique identifier | OMICS_18959 |
|---|---|
| Name | Sigma |
| Alternative name | sigma.js |
| Interface | Application programming interface |
| Restrictions to use | None |
| Programming languages | Javascript |
| License | MIT License |
| Computer skills | Basic |
| Version | 0.12.7 |
| Stability | Stable |
| Maintained | Yes |
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Maintainer
- person_outline Guillaume Plique
Sigma citations
(7)Updated regulation curation model at the Saccharomyces Genome Database
[…] of local regulatory networks. These displays distinguish between regulators and targets, and include a mouse-over capability that highlights internal sub-networks (). The networks are drawn using the sigma.js visualization library (sigmajs.org). […]
FoxP2 isoforms delineate spatiotemporal transcriptional networks for vocal learning in the zebra finch
[…] are hosted at our laboratory website (https://www.ibp.ucla.edu/research/white/genenetwork.html) along with high resolution static PDF versions. Interactive figures were exported from Gephi using the Sigma.js Exporter plugin (https://github.com/oxfordinternetinstitute/gephi-plugins).In weighted coexpression networks, each node (i.e. gene) is connected to every other node in the network, even if th […]
Genome wide profiling of Sus scrofa circular RNAs across nine organs and three developmental stages
[…] GO information with host-related genes. We also search the PubMed database to retrieve reports related to queried circRNAs. A Google© chart is used to display a diagram of circRNA abundance, whereas sigma.js is used to show a circRNA, mRNA, and miRNA interaction network. circRNAs can be browsed by their chromosomal location, classification, or tissue-specific expression pattern. We also provide a […]
Lotus Base: An integrated information portal for the model legume Lotus japonicus
[…] e expression datasets. Co-expression gene networks in CORNEA are generated on the fly by a dedicated virtual server, which returns JSON-formatted data used for asynchronous network visualization with Sigma.js in the web browser. CORGI performs a similar function to CORNEA, but instead of generation a two-dimensional co-expression network, simply retrieves a one-dimensional slice by calling a uniqu […]
Analysis of the human diseasome using phenotype similarity between common, genetic, and infectious diseases
[…] face was written in Groovy (backend) and Javascript (frontend). The disease network was visualized using the Gephi graph visualization tool, and the disease network browser was generated with Gephi’s Sigma-js export plugin (http://blogs.oii.ox.ac.uk/vis/). All graphs are visualized using a force-directed layout. […]
Tools for visualization and analysis of molecular networks, pathways, and omics data
[…] with the Spring layout performing best with respect to visual separation of subclusters.While Cytoscape and Gephi are popular tools, there is a broad spectrum of alternatives available. For example, sigma. js and Cytoscape.js are JavaScript libraries for network visualization on the web. Additionally, software packages such as iGraph and NetworkX further support network analysis and visualization […]
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