Sigma | Figure creation

[…] local regulatory networks. these displays distinguish between regulators and targets, and include a mouse-over capability that highlights internal sub-networks (). the networks are drawn using the sigma.js visualization library (sigmajs.org). , future directions for regulation curation at sgd include expansion of the revised data model to incorporate regulatory complexes in addition to single […]

[…] are hosted at our laboratory website (https://www.ibp.ucla.edu/research/white/genenetwork.html) along with high resolution static pdf versions. interactive figures were exported from gephi using the sigma.js exporter plugin (https://github.com/oxfordinternetinstitute/gephi-plugins)., in weighted coexpression networks, each node (i.e. gene) is connected to every other node in the network, even […]

[…] go information with host-related genes. we also search the pubmed database to retrieve reports related to queried circrnas. a google© chart is used to display a diagram of circrna abundance, whereas sigma.js is used to show a circrna, mrna, and mirna interaction network. circrnas can be browsed by their chromosomal location, classification, or tissue-specific expression pattern. we also provide […]

[…] was written in groovy (backend) and javascript (frontend). the disease network was visualized using the gephi graph visualization tool, and the disease network browser was generated with gephi’s sigma-js export plugin (http://blogs.oii.ox.ac.uk/vis/). all graphs are visualized using a force-directed layout., how to cite this article: hoehndorf, r. et al. analysis of the human diseasome using […]