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Citations per year

Number of citations per year for the bioinformatics software tool Sigma
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Sigma specifications

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Unique identifier OMICS_18959
Name Sigma
Alternative name sigma.js
Interface Application programming interface
Restrictions to use None
Programming languages Javascript
License MIT License
Computer skills Basic
Version 0.12.7
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Guillaume Plique

Sigma citations

 (7)
library_books

Updated regulation curation model at the Saccharomyces Genome Database

2018
PMCID: 5829562
PMID: 29688362
DOI: 10.1093/database/bay007

[…] of local regulatory networks. These displays distinguish between regulators and targets, and include a mouse-over capability that highlights internal sub-networks (). The networks are drawn using the sigma.js visualization library (sigmajs.org). […]

library_books

FoxP2 isoforms delineate spatiotemporal transcriptional networks for vocal learning in the zebra finch

2018
eLife
PMCID: 5826274
PMID: 29360038
DOI: 10.7554/eLife.30649.056

[…] are hosted at our laboratory website (https://www.ibp.ucla.edu/research/white/genenetwork.html) along with high resolution static PDF versions. Interactive figures were exported from Gephi using the Sigma.js Exporter plugin (https://github.com/oxfordinternetinstitute/gephi-plugins).In weighted coexpression networks, each node (i.e. gene) is connected to every other node in the network, even if th […]

library_books

Genome wide profiling of Sus scrofa circular RNAs across nine organs and three developmental stages

2017
PMCID: 5737845
PMID: 28575165
DOI: 10.1093/dnares/dsx022

[…] GO information with host-related genes. We also search the PubMed database to retrieve reports related to queried circRNAs. A Google© chart is used to display a diagram of circRNA abundance, whereas sigma.js is used to show a circRNA, mRNA, and miRNA interaction network. circRNAs can be browsed by their chromosomal location, classification, or tissue-specific expression pattern. We also provide a […]

library_books

Lotus Base: An integrated information portal for the model legume Lotus japonicus

2016
Sci Rep
PMCID: 5180183
PMID: 28008948
DOI: 10.1038/srep39447

[…] e expression datasets. Co-expression gene networks in CORNEA are generated on the fly by a dedicated virtual server, which returns JSON-formatted data used for asynchronous network visualization with Sigma.js in the web browser. CORGI performs a similar function to CORNEA, but instead of generation a two-dimensional co-expression network, simply retrieves a one-dimensional slice by calling a uniqu […]

library_books

Analysis of the human diseasome using phenotype similarity between common, genetic, and infectious diseases

2015
Sci Rep
PMCID: 4458913
PMID: 26051359
DOI: 10.1038/srep10888

[…] face was written in Groovy (backend) and Javascript (frontend). The disease network was visualized using the Gephi graph visualization tool, and the disease network browser was generated with Gephi’s Sigma-js export plugin (http://blogs.oii.ox.ac.uk/vis/). All graphs are visualized using a force-directed layout. […]

library_books

Tools for visualization and analysis of molecular networks, pathways, and omics data

2015
PMCID: 4461095
PMID: 26082651
DOI: 10.2147/AABC.S63534

[…] with the Spring layout performing best with respect to visual separation of subclusters.While Cytoscape and Gephi are popular tools, there is a broad spectrum of alternatives available. For example, sigma. js and Cytoscape.js are JavaScript libraries for network visualization on the web. Additionally, software packages such as iGraph and NetworkX further support network analysis and visualization […]


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