SigMod statistics

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Associated diseases

Associated diseases

SigMod specifications


Unique identifier OMICS_14849
Name SigMod
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data A list of gene-level P-values obtained from GWAS SNP-level P-values, a GeneNet (gene network).
Output data A module strongly interconnected and enriched in association signals.
Operating system Unix/Linux
Programming languages R
Computer skills Advanced
Version 2
Stability Stable
Maintained Yes



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  • person_outline Yuanlong Liu <>

Publication for SigMod

SigMod in publications

PMCID: 5876703
PMID: 29558434
DOI: 10.3390/s18030924

[…] transfer among memory cells. the particular structures in memory cells include the input, output, and forget gates. an lstm memory cell is shown in ., the iterating equations are as follows:(4)ft=sigmod(wf⋅[ht−1,xt]+bf) (5)it=sigmod(wi⋅[ht−1,xt]+bi) (6)c∧t=tanh(wc⋅[ht−1,xt]+bc) (7)ct=ft⋅ct−1+it⋅c∧t (8)ot=sigmod(wo⋅[ht−1,xt]+bo) (9)ht=ot⋅tanh(ct) where w is the weight matrix; b is the bias […]

PMCID: 5584398
PMID: 28872630
DOI: 10.1038/sdata.2017.114

[…] from the association for computing machinery (a leading computer science publisher) special interest group on management of data 2008 to 2011 conferences are available online a maintained and updated list of existing provenance tools is available at, as computer scientists have been developing tools […]

PMCID: 5503271
PMID: 28692691
DOI: 10.1371/journal.pone.0180526

[…] for nonlinear svr, there are a number of kernel functions which have been found to provide good generalization capabilities, such as polynomials, radial basis function (rbf), sigmod. here we present the polynomials and rbf kernel functions as follows:, polynomial kernel: k(u, u′) = ((u ⋅ u′) + h)p., rbf kernel: k(u,u′)=exp(-∥u-u′∥22σ2)., details about svr, […]

PMCID: 5433746
PMID: 28520747
DOI: 10.1371/journal.pone.0177523

[…] selected from dblp ( we only keep entries of the snapshot that correspond to the papers published before march 10th, 2013. the titles of the papers that are published in sigmod, vldb, sigir, cikm, icde and edbt conferences from 2004 to 2013 are selected. from this dataset, we choose the titles of 8,884 papers to test our algorithm and the comparisons, which contains […]

PMCID: 5298765
PMID: 28117689
DOI: 10.3390/s17010192

[…] can be expressed as follows: (4)a=f(wx+b) (5)x^=g(w^a+b^) where w and w^ are the weight matrixes of encoder and decoder, respectively. additionally, f(⋅) and g(⋅) are the mapping functions such as sigmod function or tanh function. when x^≈x, it is considered that the autoencoder reconstructs the input. for the dataset containing m samples, the cost function is defined as follows []: […]

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SigMod institution(s)
INSERM, Genetic Variation and Human Diseases Unit, UMR-946, Paris, France; Université Paris Diderot, Sorbonne Paris Cité, Institut Universitaire d’Hématologie, Paris, France; Machine Learning and Computational Biology Lab, Department of Biosystems Science and Engineering, ETH Zurich, Switzerland
SigMod funding source(s)
Supported by the Marie Curie Initial Training Network MLPM2012, Grant No. 316861, by the French National Agency for Research ANR-USPC-2012-EDAGWAS, ANR-11-BSV1- 027-GWIS-AM and ANR-15-EPIG-0004-05, and a contract from the European Commission (018996).

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