Signal-3L statistics

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Citations per year

Number of citations per year for the bioinformatics software tool Signal-3L
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This map represents all the scientific publications referring to Signal-3L per scientific context
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Protocols

Signal-3L specifications

Information


Unique identifier OMICS_18488
Name Signal-3L
Interface Web user interface
Restrictions to use None
Input data Some protein sequences.
Input format FASTA
Computer skills Basic
Version 2.0
Stability Stable
Maintained Yes

Maintainer


  • person_outline Hong-Bin Shen

Publications for Signal-3L

Signal-3L citations

 (31)
library_books

Alport syndrome cold cases: Missing mutations identified by exome sequencing and functional analysis

2017
PLoS One
PMCID: 5453569
PMID: 28570636
DOI: 10.1371/journal.pone.0178630

[…] icing Finder software (http://www.umd.be/HSF3/, last accessed October 2016).Signal-peptide prediction of wild-type and mutant COL4A3 amino acid sequences was performed using SignalP 4.1, PrediSi, and Signal-3L 2.0 (http://www.cbs.dtu.dk/services/SignalP/, http://www.predisi.de/, http://www.csbio.sjtu.edu.cn/bioinf/Signal-3L/, last accessed October 2016)Potential pathogenicity of the candidate COL4 […]

library_books

Haemophilus parasuis cytolethal distending toxin induces cell cycle arrest and p53 dependent apoptosis

2017
PLoS One
PMCID: 5436662
PMID: 28545143
DOI: 10.1371/journal.pone.0177199

[…] SIGNAL-BLAST [] analysis indicated that the first 19, 20 and 19 aa of the N-termini of CdtA, CdtB and CdTC, respectively are signal peptides. Both Predsi (http://www.predisi.de/home.html) and Signal-3L [] (http://www.csbio.sjtu.edu.cn/bioinf/Signal-3L/) analysis indicate that the first N-terminal 19 aa and of CdtA and CdtC, and 21 aa of CdtB are signal peptides ().Based on the signal pepti […]

library_books

Transcriptome Analysis of Mango (Mangifera indica L.) Fruit Epidermal Peel to Identify Putative Cuticle Associated Genes

2017
Sci Rep
PMCID: 5397871
PMID: 28425468
DOI: 10.1038/srep46163

[…] mango database using BLASTX (E-value ≤ 1E-5). The Coding DNA Sequence (CDS) and deduced amino acid sequence were obtained using Open Reading Frame Finder (http://www.ncbi.nlm.nih.gov/gorf/gorf.html). Signal-3L was used to identify signal peptides and PredGPI predictor to identify glycosylphosphatidylinositol (GPI) domains. Oligonucleotide primers were designed according to Thornton and Basu and ar […]

library_books

Metabolic engineering of Ustilago trichophora TZ1 for improved malic acid production

2017
Metab Eng Com
PMCID: 5678829
PMID: 29142828
DOI: 10.1016/j.meteno.2017.01.002

[…] 7% homology), Mdh1 (97% homology), Mdh2 (94% homology), Ssu1 (89% homology), and Ssu2 (68% homology). For the malate dehydrogenases N-terminal targeting sequences were analyzed using a combination of Signal-3L and TargetP 1.1 (). The putative localization for Mdh1 was the cytosol and for Mdh2 the mitochondrion. The N-terminal mitochondrial targeting sequence for mdh2 was either retained or removed […]

library_books

SEC Translocon Dependent Extracytoplasmic Proteins of Candidatus Liberibacter asiaticus

2016
Front Microbiol
PMCID: 5167687
PMID: 28066334
DOI: 10.3389/fmicb.2016.01989

[…] senger protein for transportation out of the cytoplasm in prokaryotes (). Many methods have been used for predicting signal peptides, including SignalP (; ; ; ), PrediSi (), SPEPlip (), Signal-CF (), Signal-3L (), signal-BLAST (), Phobius (), LipoP () and Philius (). All the prediction methods have limited ability to discriminate between signal peptides and N-terminal transmembrane helices. The co […]

library_books

The Structure of Treponema pallidum Tp0624 Reveals a Modular Assembly of Divergently Functionalized and Previously Uncharacterized Domains

2016
PLoS One
PMCID: 5104382
PMID: 27832149
DOI: 10.1371/journal.pone.0166274

[…] 9), Spoctopus (http://octopus.cbr.su.se/; cleavage at G58), SPEPLip (http://gpcr.biocomp.unibo.it/cgi/predictors/spep/pred_spepcgi.cgi; cleavage at A59), Signal3L (http://www.csbio.sjtu.edu.cn/bioinf/Signal-3L/; cleavage at A30), EMBOSS sigcleave (http://www.bioinformatics.nl/cgi-bin/emboss/sigcleave; cleavage at A32), and SignalP (http://www.cbs.dtu.dk/services/SignalP/; SPI signal sequence not f […]


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Signal-3L institution(s)
Institute of Image Processing and Pattern Recognition, Shanghai Jiao Tong University, Shanghai, China; Key Laboratory of System Control and Information Processing, Ministry of Education of China, Shanghai, China
Signal-3L funding source(s)
Supported by the Natural Science Foundation of China (NSFC Nos. 61671288, 91530321, 61603161), and Science and Technology Commission of Shanghai Municipality (No. 16JC1404300).

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