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Information
| Unique identifier | OMICS_18488 |
|---|---|
| Name | Signal-3L |
| Interface | Web user interface |
| Restrictions to use | None |
| Input data | Some protein sequences. |
| Input format | FASTA |
| Computer skills | Basic |
| Version | 2.0 |
| Stability | Stable |
| Maintained | Yes |
Maintainer
- person_outline Hong-Bin Shen
Publications for Signal-3L
Signal-3L citations
(31)Alport syndrome cold cases: Missing mutations identified by exome sequencing and functional analysis
[…] icing Finder software (http://www.umd.be/HSF3/, last accessed October 2016).Signal-peptide prediction of wild-type and mutant COL4A3 amino acid sequences was performed using SignalP 4.1, PrediSi, and Signal-3L 2.0 (http://www.cbs.dtu.dk/services/SignalP/, http://www.predisi.de/, http://www.csbio.sjtu.edu.cn/bioinf/Signal-3L/, last accessed October 2016)Potential pathogenicity of the candidate COL4 […]
Haemophilus parasuis cytolethal distending toxin induces cell cycle arrest and p53 dependent apoptosis
[…] SIGNAL-BLAST [] analysis indicated that the first 19, 20 and 19 aa of the N-termini of CdtA, CdtB and CdTC, respectively are signal peptides. Both Predsi (http://www.predisi.de/home.html) and Signal-3L [] (http://www.csbio.sjtu.edu.cn/bioinf/Signal-3L/) analysis indicate that the first N-terminal 19 aa and of CdtA and CdtC, and 21 aa of CdtB are signal peptides ().Based on the signal pepti […]
Transcriptome Analysis of Mango (Mangifera indica L.) Fruit Epidermal Peel to Identify Putative Cuticle Associated Genes
[…] mango database using BLASTX (E-value ≤ 1E-5). The Coding DNA Sequence (CDS) and deduced amino acid sequence were obtained using Open Reading Frame Finder (http://www.ncbi.nlm.nih.gov/gorf/gorf.html). Signal-3L was used to identify signal peptides and PredGPI predictor to identify glycosylphosphatidylinositol (GPI) domains. Oligonucleotide primers were designed according to Thornton and Basu and ar […]
Metabolic engineering of Ustilago trichophora TZ1 for improved malic acid production
[…] 7% homology), Mdh1 (97% homology), Mdh2 (94% homology), Ssu1 (89% homology), and Ssu2 (68% homology). For the malate dehydrogenases N-terminal targeting sequences were analyzed using a combination of Signal-3L and TargetP 1.1 (). The putative localization for Mdh1 was the cytosol and for Mdh2 the mitochondrion. The N-terminal mitochondrial targeting sequence for mdh2 was either retained or removed […]
SEC Translocon Dependent Extracytoplasmic Proteins of Candidatus Liberibacter asiaticus
[…] senger protein for transportation out of the cytoplasm in prokaryotes (). Many methods have been used for predicting signal peptides, including SignalP (; ; ; ), PrediSi (), SPEPlip (), Signal-CF (), Signal-3L (), signal-BLAST (), Phobius (), LipoP () and Philius (). All the prediction methods have limited ability to discriminate between signal peptides and N-terminal transmembrane helices. The co […]
The Structure of Treponema pallidum Tp0624 Reveals a Modular Assembly of Divergently Functionalized and Previously Uncharacterized Domains
[…] 9), Spoctopus (http://octopus.cbr.su.se/; cleavage at G58), SPEPLip (http://gpcr.biocomp.unibo.it/cgi/predictors/spep/pred_spepcgi.cgi; cleavage at A59), Signal3L (http://www.csbio.sjtu.edu.cn/bioinf/Signal-3L/; cleavage at A30), EMBOSS sigcleave (http://www.bioinformatics.nl/cgi-bin/emboss/sigcleave; cleavage at A32), and SignalP (http://www.cbs.dtu.dk/services/SignalP/; SPI signal sequence not f […]
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