Signal-BLAST statistics

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Associated diseases

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Signal-BLAST specifications

Information


Unique identifier OMICS_03884
Name Signal-BLAST
Interface Web user interface
Restrictions to use None
Input data Single or several sequences.
Input format FASTA
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Manfred Sippl <>

Publication for Signal-BLAST

Signal-BLAST in publications

 (16)
PMCID: 5933757
PMID: 29723289
DOI: 10.1371/journal.pone.0196954

[…] individual responses ± se and analyzed using one-way anova., predicted signal sequence cleavage sites were obtained using signalp v4.1 (http://www.cbs.dtu.dk/services/signalp/) and confirmed using signal-blast (sigpep.services.came.sbg.ac.at/signalblast.html). discrepancies between algorithms were resolved by selecting the most likely cleavage site based on the edman degradation/mass […]

PMCID: 5606126
PMID: 28931431
DOI: 10.1186/s13071-017-2359-2

[…] nucleotide sequences corresponding to mature domains of tsmfas1 and tsmfas2 (amino acid residues between 23 and 841 and between 38 and 597, respectively) were verified with signal-blast (http://sigpep.services.came.sbg.ac.at/signalblast.html) and signalp 4.1 server (http://www.cbs.dtu.dk/services/signalp/). these genes were amplified with a tsm cdna library [] using […]

PMCID: 5595328
PMID: 28898293
DOI: 10.1371/journal.pone.0184255

[…] β-lactams (). expressing varg conferred a modest resistance to penicillins and cephalosporins and a relatively high resistance to carbapenems on the kam3 cells (). although varg is predicted (using signal blast) to possess a signal-peptide, the level of resistance would reflect the amount of varg reaching the periplasm, which may be less than optimal in e. coli., arelative resistance […]

PMCID: 5510769
PMID: 28747815
DOI: 10.1177/1176934317713484

[…] clustalw-aligned sequences and simplot (v 3.5.1). protein sequences were analysed using predictprotein (http://www.predictprotein.org), protscale and signalp programs (http://au.expasy.org), and signal-blast (https://www.came.sbg.ac.at/). transmembrane predictions were made using several programs: phdhtm algorithm (neural networks) using predictprotein; tmhmm server 2 (hidden markov model) […]

PMCID: 5436662
PMID: 28545143
DOI: 10.1371/journal.pone.0177199

[…] analysis of variance (anova) was used to compare the percentage of g2 phase cells, apoptotic cells or relative mrna change folds. a p value of <0.05 was considered significantly different., signal-blast [] analysis indicated that the first 19, 20 and 19 aa of the n-termini of cdta, cdtb and cdtc, respectively are signal peptides. both predsi (http://www.predisi.de/home.html) […]


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Signal-BLAST institution(s)
Center of Applied Molecular Engineering, University of Salzburg, Salzburg, Austria

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